Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00057 and ECD_00058 are separated by 52 nucleotides ECD_00058 and ECD_00059 are separated by 254 nucleotides
ECD_00057: ECD_00057 - peptidyl-prolyl cis-trans isomerase (PPIase), at 57,612 to 58,898
_00057
ECD_00058: ECD_00058 - LPS assembly OM complex LptDE, beta-barrel component, at 58,951 to 61,305
_00058
ECD_00059: ECD_00059 - membrane-anchored DnaK co-chaperone, DNA-binding protein, at 61,560 to 62,375
_00059
Position (kb) 58
59
60
61
62 Strain fitness (log2 ratio) -1
0
1
2 at 58.488 kb on - strand, within ECD_00057 at 58.526 kb on - strand, within ECD_00057 at 61.317 kb on - strand at 61.317 kb on - strand at 61.364 kb on - strand at 61.364 kb on - strand at 61.364 kb on - strand at 61.369 kb on - strand at 61.369 kb on - strand at 61.392 kb on + strand at 61.393 kb on - strand at 61.393 kb on - strand at 61.444 kb on + strand at 61.444 kb on + strand at 61.445 kb on - strand at 61.445 kb on - strand at 61.511 kb on + strand at 61.511 kb on + strand at 61.511 kb on + strand at 61.513 kb on + strand at 61.513 kb on + strand at 61.525 kb on + strand at 61.557 kb on + strand at 61.557 kb on + strand at 61.557 kb on + strand at 61.557 kb on + strand at 61.558 kb on - strand at 61.559 kb on + strand at 61.559 kb on + strand at 61.567 kb on - strand at 61.633 kb on + strand at 61.642 kb on + strand, within ECD_00059 at 61.642 kb on + strand, within ECD_00059 at 61.643 kb on - strand, within ECD_00059 at 61.677 kb on - strand, within ECD_00059 at 61.753 kb on + strand, within ECD_00059 at 61.787 kb on + strand, within ECD_00059 at 61.949 kb on + strand, within ECD_00059 at 62.022 kb on + strand, within ECD_00059 at 62.022 kb on + strand, within ECD_00059 at 62.180 kb on + strand, within ECD_00059 at 62.181 kb on - strand, within ECD_00059 at 62.237 kb on + strand, within ECD_00059 at 62.237 kb on + strand, within ECD_00059 at 62.238 kb on - strand, within ECD_00059 at 62.265 kb on - strand, within ECD_00059
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 58,488 - ECD_00057 0.68 +1.1 58,526 - ECD_00057 0.71 +1.6 61,317 - -0.8 61,317 - +0.8 61,364 - -0.1 61,364 - +1.2 61,364 - +0.6 61,369 - -1.0 61,369 - -1.7 61,392 + -0.4 61,393 - +1.6 61,393 - +0.4 61,444 + +1.8 61,444 + -0.4 61,445 - -0.7 61,445 - +0.3 61,511 + +0.6 61,511 + +0.6 61,511 + -1.0 61,513 + -0.4 61,513 + +0.8 61,525 + +1.1 61,557 + -0.5 61,557 + +0.6 61,557 + -0.3 61,557 + +1.2 61,558 - -0.7 61,559 + +0.4 61,559 + -1.7 61,567 - -1.4 61,633 + -0.2 61,642 + ECD_00059 0.10 +1.0 61,642 + ECD_00059 0.10 +0.6 61,643 - ECD_00059 0.10 +1.3 61,677 - ECD_00059 0.14 -0.1 61,753 + ECD_00059 0.24 -0.9 61,787 + ECD_00059 0.28 +0.8 61,949 + ECD_00059 0.48 -0.0 62,022 + ECD_00059 0.57 -0.6 62,022 + ECD_00059 0.57 -0.7 62,180 + ECD_00059 0.76 +0.6 62,181 - ECD_00059 0.76 -1.4 62,237 + ECD_00059 0.83 +0.0 62,237 + ECD_00059 0.83 -0.3 62,238 - ECD_00059 0.83 +0.1 62,265 - ECD_00059 0.86 +0.5
Or see this region's nucleotide sequence