Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00055 and ECD_00056 overlap by 4 nucleotides ECD_00056 and ECD_00057 overlap by 1 nucleotides ECD_00057 and ECD_00058 are separated by 52 nucleotides
ECD_00055: ECD_00055 - 16S rRNA m(6)A1518, m(6)A1519 dimethyltransferase, SAM-dependent, at 55,805 to 56,626
_00055
ECD_00056: ECD_00056 - 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent, at 56,623 to 57,612
_00056
ECD_00057: ECD_00057 - peptidyl-prolyl cis-trans isomerase (PPIase), at 57,612 to 58,898
_00057
ECD_00058: ECD_00058 - LPS assembly OM complex LptDE, beta-barrel component, at 58,951 to 61,305
_00058
Position (kb) 57
58
59 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 56.743 kb on - strand, within ECD_00056 at 56.820 kb on - strand, within ECD_00056 at 56.852 kb on + strand, within ECD_00056 at 56.945 kb on - strand, within ECD_00056 at 56.945 kb on - strand, within ECD_00056 at 56.961 kb on + strand, within ECD_00056 at 57.055 kb on - strand, within ECD_00056 at 57.235 kb on - strand, within ECD_00056 at 57.246 kb on + strand, within ECD_00056 at 57.247 kb on - strand, within ECD_00056 at 57.326 kb on + strand, within ECD_00056 at 57.326 kb on + strand, within ECD_00056 at 57.327 kb on - strand, within ECD_00056 at 57.327 kb on - strand, within ECD_00056 at 57.327 kb on - strand, within ECD_00056 at 57.327 kb on - strand, within ECD_00056 at 57.327 kb on - strand, within ECD_00056 at 57.373 kb on + strand, within ECD_00056 at 57.550 kb on + strand at 57.948 kb on - strand, within ECD_00057 at 58.488 kb on - strand, within ECD_00057 at 58.526 kb on - strand, within ECD_00057
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 56,743 - ECD_00056 0.12 -0.4 56,820 - ECD_00056 0.20 +0.1 56,852 + ECD_00056 0.23 +1.8 56,945 - ECD_00056 0.33 +0.2 56,945 - ECD_00056 0.33 +2.2 56,961 + ECD_00056 0.34 +1.3 57,055 - ECD_00056 0.44 +0.2 57,235 - ECD_00056 0.62 +1.1 57,246 + ECD_00056 0.63 +0.5 57,247 - ECD_00056 0.63 +4.9 57,326 + ECD_00056 0.71 +0.2 57,326 + ECD_00056 0.71 +1.2 57,327 - ECD_00056 0.71 +0.3 57,327 - ECD_00056 0.71 -1.2 57,327 - ECD_00056 0.71 -0.5 57,327 - ECD_00056 0.71 +1.0 57,327 - ECD_00056 0.71 +0.5 57,373 + ECD_00056 0.76 +0.5 57,550 + -0.3 57,948 - ECD_00057 0.26 +2.1 58,488 - ECD_00057 0.68 +1.1 58,526 - ECD_00057 0.71 +1.6
Or see this region's nucleotide sequence