Strain Fitness in Pseudomonas segetis P6 around MPMX49_01699

Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
1,798,200	-		MPMX49_01697	0.76	+0.8
1,798,366	+		MPMX49_01697	0.88	+1.4
1,798,367	-		MPMX49_01697	0.88	+2.4
1,798,367	-		MPMX49_01697	0.88	+2.4
1,798,411	+				+1.4
1,798,575	-				+0.8
1,798,592	+				-1.1
1,798,592	+				+0.8
1,798,593	-				+1.8
1,798,666	-				-0.0
1,798,666	-				-0.3
1,798,666	-				+1.2
1,798,705	+				+0.4
1,798,706	-				+0.7
1,798,784	-				-0.5
1,798,784	-				+1.1
1,798,815	+				+0.9
1,798,815	+				+0.0
1,798,815	+				-0.5
1,798,852	+		MPMX49_01698	0.12	-1.9
1,798,931	+		MPMX49_01698	0.43	+0.4
1,798,931	+		MPMX49_01698	0.43	-1.9
1,798,948	-		MPMX49_01698	0.50	-2.0
1,799,047	+		MPMX49_01698	0.89	+0.4
1,799,047	+		MPMX49_01698	0.89	-1.2
1,799,048	-				-1.2
1,799,048	-				-1.2
1,799,048	-				-0.8
1,799,048	-				+0.0
1,799,053	+				-0.2
1,799,053	+				-2.9
1,799,054	-				-0.0
1,799,126	-				+0.1
1,799,126	-				-0.0
1,799,129	-				+0.3
1,799,136	-				+1.0
1,799,144	-				-0.7
1,799,283	-		MPMX49_01699	0.14	-1.0
1,799,283	-		MPMX49_01699	0.14	-0.2
1,799,327	+		MPMX49_01699	0.18	-0.3
1,799,327	+		MPMX49_01699	0.18	+0.1
1,799,327	+		MPMX49_01699	0.18	+0.6
1,799,327	+		MPMX49_01699	0.18	-0.0
1,799,327	+		MPMX49_01699	0.18	-0.1
1,799,327	+		MPMX49_01699	0.18	-1.0
1,799,328	-		MPMX49_01699	0.18	+0.7
1,799,328	-		MPMX49_01699	0.18	+0.3
1,799,328	-		MPMX49_01699	0.18	-0.2
1,799,338	+		MPMX49_01699	0.19	-0.5
1,799,339	-		MPMX49_01699	0.19	-0.2
1,799,356	+		MPMX49_01699	0.21	-0.0
1,799,357	-		MPMX49_01699	0.21	-1.5
1,799,357	-		MPMX49_01699	0.21	-0.8
1,799,357	-		MPMX49_01699	0.21	-0.1
1,799,357	-		MPMX49_01699	0.21	-1.2
1,799,357	-		MPMX49_01699	0.21	+0.4
1,799,602	+		MPMX49_01699	0.44	+4.8
1,799,622	+		MPMX49_01699	0.46	+0.1
1,799,622	+		MPMX49_01699	0.46	-0.2
1,799,623	-		MPMX49_01699	0.46	-0.6
1,799,714	+		MPMX49_01699	0.54	+1.0
1,799,714	+		MPMX49_01699	0.54	-0.6
1,799,715	-		MPMX49_01699	0.54	-0.7
1,799,763	+		MPMX49_01699	0.59	-1.0
1,799,763	+		MPMX49_01699	0.59	+0.5
1,799,763	+		MPMX49_01699	0.59	+1.4
1,799,764	-		MPMX49_01699	0.59	+1.6
1,799,764	-		MPMX49_01699	0.59	-1.0
1,799,764	-		MPMX49_01699	0.59	-0.7
1,799,811	+		MPMX49_01699	0.63	+0.2
1,799,811	+		MPMX49_01699	0.63	+0.1
1,799,811	+		MPMX49_01699	0.63	-0.1
1,799,812	-		MPMX49_01699	0.63	-0.1
1,799,812	-		MPMX49_01699	0.63	+0.1
1,799,812	-		MPMX49_01699	0.63	+0.6
1,799,812	-		MPMX49_01699	0.63	-0.7
1,799,812	-		MPMX49_01699	0.63	+0.1
1,799,812	-		MPMX49_01699	0.63	-0.5
1,799,813	+		MPMX49_01699	0.63	-0.6
1,799,813	+		MPMX49_01699	0.63	-0.2
1,799,813	+		MPMX49_01699	0.63	-0.6
1,799,814	-		MPMX49_01699	0.63	+0.5
1,799,814	-		MPMX49_01699	0.63	+0.2
1,799,814	-		MPMX49_01699	0.63	-0.5
1,799,814	-		MPMX49_01699	0.63	-0.5
1,799,841	+		MPMX49_01699	0.66	+0.0
1,799,842	-		MPMX49_01699	0.66	+0.5
1,799,842	-		MPMX49_01699	0.66	-0.2
1,799,889	+		MPMX49_01699	0.70	-2.2
1,799,889	+		MPMX49_01699	0.70	+0.4
1,799,889	+		MPMX49_01699	0.70	+1.7
1,799,889	+		MPMX49_01699	0.70	-0.3
1,799,889	+		MPMX49_01699	0.70	-0.7
1,799,889	+		MPMX49_01699	0.70	+1.1
1,799,889	+		MPMX49_01699	0.70	-0.3
1,799,890	-		MPMX49_01699	0.70	-0.8
1,799,890	-		MPMX49_01699	0.70	-0.6
1,799,890	-		MPMX49_01699	0.70	+1.6
1,799,890	-		MPMX49_01699	0.70	-0.7
1,799,890	-		MPMX49_01699	0.70	-0.5
1,799,893	+		MPMX49_01699	0.71	+1.8
1,799,894	-		MPMX49_01699	0.71	+0.8
1,799,894	-		MPMX49_01699	0.71	+0.7
1,799,894	-		MPMX49_01699	0.71	+0.3
1,799,967	+		MPMX49_01699	0.78	+0.4
1,799,982	+		MPMX49_01699	0.79	-0.5
1,799,983	-		MPMX49_01699	0.79	-0.4
1,799,983	-		MPMX49_01699	0.79	+0.8
1,799,983	-		MPMX49_01699	0.79	-1.2
1,799,983	-		MPMX49_01699	0.79	-0.8
1,800,208	-				-0.6
1,800,210	+				+0.8
1,800,211	-				+0.0
1,800,211	-				+1.0
1,800,211	-				+1.4
1,800,255	+				-0.6
1,800,256	-				-0.4
1,800,256	-				-1.2
1,800,289	+				-1.2
1,800,290	-				-0.3
1,800,290	-				+0.7
1,800,290	-				-0.3
1,800,311	+				+0.5
1,800,388	-		MPMX49_01700	0.18	-0.4
1,800,424	-		MPMX49_01700	0.26	-0.2
1,800,433	+		MPMX49_01700	0.27	-0.1
1,800,433	+		MPMX49_01700	0.27	-0.7
1,800,673	+		MPMX49_01700	0.78	-0.2
1,800,674	-		MPMX49_01700	0.78	-0.7
1,800,776	+				-0.2
1,800,777	-				-0.5
1,800,862	+				-1.3
1,800,862	+				+0.0
1,800,862	+				-0.4
1,800,862	+				+0.3
1,800,862	+				-0.1
1,800,862	+				+0.2
1,800,863	-				-0.4
1,800,863	-				+1.0
1,800,863	-				-0.5
1,800,863	-				+2.8
1,800,863	-				-1.5
1,800,863	-				+1.4
1,800,983	+		MPMX49_01701	0.29	+0.3
1,800,983	+		MPMX49_01701	0.29	-0.6
1,800,983	+		MPMX49_01701	0.29	+0.2
1,800,984	-		MPMX49_01701	0.29	-0.8
1,800,984	-		MPMX49_01701	0.29	-2.7
1,801,027	-		MPMX49_01701	0.37	+0.1
1,801,079	+		MPMX49_01701	0.46	-0.4
1,801,080	-		MPMX49_01701	0.46	-1.8
1,801,080	-		MPMX49_01701	0.46	+1.2
1,801,089	-		MPMX49_01701	0.48	-2.5
1,801,089	-		MPMX49_01701	0.48	+0.3