Strain Fitness in Escherichia coli BL21 around ECD_t00083

Experiment: N4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04135 and ECD_t00083 are separated by 195 nucleotidesECD_t00083 and ECD_04136 are separated by 260 nucleotides ECD_04135: ECD_04135 - broad specificity NADPH-dependent aldehyde reductase, Zn-containing, at 4,406,783 to 4,407,802 _04135 ECD_t00083: ECD_t00083 - tRNA-Leu, at 4,407,998 to 4,408,082 _t00083 ECD_04136: ECD_04136 - putative integrase, at 4,408,343 to 4,409,533 _04136 Position (kb) 4407 4408 4409Strain fitness (log2 ratio) -2 -1 0 1 2at 4407.042 kb on + strand, within ECD_04135at 4407.202 kb on + strand, within ECD_04135at 4407.208 kb on + strand, within ECD_04135at 4407.249 kb on - strand, within ECD_04135at 4407.249 kb on - strand, within ECD_04135at 4407.249 kb on - strand, within ECD_04135at 4407.307 kb on + strand, within ECD_04135at 4407.520 kb on + strand, within ECD_04135at 4407.748 kb on - strandat 4407.784 kb on - strandat 4407.784 kb on - strandat 4407.837 kb on + strandat 4407.837 kb on + strandat 4407.891 kb on - strandat 4407.964 kb on - strandat 4407.965 kb on + strandat 4407.966 kb on - strandat 4407.986 kb on + strandat 4408.050 kb on + strand, within ECD_t00083at 4408.050 kb on + strand, within ECD_t00083at 4408.092 kb on - strandat 4408.095 kb on + strandat 4408.095 kb on + strandat 4408.119 kb on + strandat 4408.139 kb on + strandat 4408.140 kb on - strandat 4408.160 kb on + strandat 4408.161 kb on - strandat 4408.161 kb on - strandat 4408.196 kb on + strandat 4408.204 kb on + strandat 4408.204 kb on + strandat 4408.204 kb on + strandat 4408.204 kb on + strandat 4408.204 kb on + strandat 4408.204 kb on + strandat 4408.204 kb on + strandat 4408.204 kb on + strandat 4408.204 kb on + strandat 4408.204 kb on + strandat 4408.205 kb on - strandat 4408.205 kb on - strandat 4408.205 kb on - strandat 4408.205 kb on - strandat 4408.205 kb on - strandat 4408.205 kb on - strandat 4408.225 kb on - strandat 4408.247 kb on + strandat 4408.265 kb on - strandat 4408.282 kb on + strandat 4408.282 kb on + strandat 4408.283 kb on - strandat 4408.319 kb on + strandat 4408.320 kb on - strandat 4408.372 kb on + strandat 4408.376 kb on + strandat 4408.391 kb on + strandat 4408.433 kb on + strandat 4408.464 kb on + strand, within ECD_04136at 4408.464 kb on + strand, within ECD_04136at 4408.464 kb on + strand, within ECD_04136at 4408.484 kb on - strand, within ECD_04136at 4408.531 kb on + strand, within ECD_04136at 4408.531 kb on + strand, within ECD_04136at 4408.646 kb on - strand, within ECD_04136at 4408.701 kb on + strand, within ECD_04136at 4408.711 kb on + strand, within ECD_04136at 4408.711 kb on + strand, within ECD_04136at 4408.722 kb on + strand, within ECD_04136at 4408.771 kb on + strand, within ECD_04136at 4408.787 kb on + strand, within ECD_04136at 4408.906 kb on + strand, within ECD_04136at 4408.907 kb on - strand, within ECD_04136at 4408.914 kb on + strand, within ECD_04136at 4408.918 kb on + strand, within ECD_04136at 4408.918 kb on + strand, within ECD_04136at 4408.918 kb on + strand, within ECD_04136at 4408.918 kb on + strand, within ECD_04136at 4408.918 kb on + strand, within ECD_04136at 4408.919 kb on - strand, within ECD_04136at 4408.919 kb on - strand, within ECD_04136at 4408.919 kb on - strand, within ECD_04136at 4408.919 kb on - strand, within ECD_04136at 4408.922 kb on + strand, within ECD_04136at 4408.922 kb on + strand, within ECD_04136at 4408.922 kb on + strand, within ECD_04136at 4408.922 kb on + strand, within ECD_04136at 4408.922 kb on + strand, within ECD_04136at 4408.922 kb on + strand, within ECD_04136at 4408.922 kb on + strand, within ECD_04136at 4408.922 kb on + strand, within ECD_04136at 4408.923 kb on - strand, within ECD_04136at 4408.923 kb on - strand, within ECD_04136at 4408.923 kb on - strand, within ECD_04136at 4408.923 kb on - strand, within ECD_04136at 4408.923 kb on - strand, within ECD_04136at 4408.923 kb on - strand, within ECD_04136at 4408.923 kb on - strand, within ECD_04136at 4408.923 kb on - strand, within ECD_04136at 4408.924 kb on + strand, within ECD_04136at 4408.931 kb on - strand, within ECD_04136at 4408.931 kb on - strand, within ECD_04136at 4408.954 kb on - strand, within ECD_04136at 4408.975 kb on + strand, within ECD_04136at 4409.032 kb on + strand, within ECD_04136at 4409.032 kb on + strand, within ECD_04136

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Per-strain Table

Position Strand Gene LocusTag Fraction N4
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4,407,042 + ECD_04135 0.25 -0.7
4,407,202 + ECD_04135 0.41 -1.2
4,407,208 + ECD_04135 0.42 +0.3
4,407,249 - ECD_04135 0.46 +0.0
4,407,249 - ECD_04135 0.46 +0.8
4,407,249 - ECD_04135 0.46 -1.8
4,407,307 + ECD_04135 0.51 +0.4
4,407,520 + ECD_04135 0.72 -0.3
4,407,748 - +0.2
4,407,784 - -0.2
4,407,784 - -0.5
4,407,837 + +1.7
4,407,837 + +0.4
4,407,891 - -0.5
4,407,964 - +0.7
4,407,965 + -0.4
4,407,966 - +0.9
4,407,986 + +0.1
4,408,050 + ECD_t00083 0.61 -1.0
4,408,050 + ECD_t00083 0.61 -0.8
4,408,092 - -0.2
4,408,095 + +0.0
4,408,095 + -0.2
4,408,119 + -0.4
4,408,139 + -0.5
4,408,140 - -0.4
4,408,160 + +1.9
4,408,161 - +0.3
4,408,161 - +0.2
4,408,196 + -0.7
4,408,204 + +0.3
4,408,204 + +0.9
4,408,204 + +0.4
4,408,204 + -0.0
4,408,204 + -0.1
4,408,204 + -0.6
4,408,204 + +1.0
4,408,204 + +1.4
4,408,204 + -0.1
4,408,204 + -0.3
4,408,205 - -0.8
4,408,205 - -0.5
4,408,205 - -0.5
4,408,205 - -0.7
4,408,205 - -0.9
4,408,205 - -0.2
4,408,225 - +0.2
4,408,247 + -0.0
4,408,265 - +1.1
4,408,282 + +0.9
4,408,282 + -0.1
4,408,283 - -0.0
4,408,319 + -0.5
4,408,320 - -1.6
4,408,372 + -0.3
4,408,376 + +1.1
4,408,391 + -0.4
4,408,433 + -0.4
4,408,464 + ECD_04136 0.10 +1.4
4,408,464 + ECD_04136 0.10 -0.2
4,408,464 + ECD_04136 0.10 +0.9
4,408,484 - ECD_04136 0.12 -0.3
4,408,531 + ECD_04136 0.16 -0.7
4,408,531 + ECD_04136 0.16 -0.4
4,408,646 - ECD_04136 0.25 -0.9
4,408,701 + ECD_04136 0.30 +1.2
4,408,711 + ECD_04136 0.31 -0.7
4,408,711 + ECD_04136 0.31 -0.3
4,408,722 + ECD_04136 0.32 +1.5
4,408,771 + ECD_04136 0.36 -0.5
4,408,787 + ECD_04136 0.37 -0.3
4,408,906 + ECD_04136 0.47 +0.7
4,408,907 - ECD_04136 0.47 +0.2
4,408,914 + ECD_04136 0.48 +0.8
4,408,918 + ECD_04136 0.48 -0.2
4,408,918 + ECD_04136 0.48 +0.2
4,408,918 + ECD_04136 0.48 +0.2
4,408,918 + ECD_04136 0.48 +0.3
4,408,918 + ECD_04136 0.48 +0.1
4,408,919 - ECD_04136 0.48 -0.1
4,408,919 - ECD_04136 0.48 +0.2
4,408,919 - ECD_04136 0.48 -0.0
4,408,919 - ECD_04136 0.48 -0.2
4,408,922 + ECD_04136 0.49 +0.0
4,408,922 + ECD_04136 0.49 +0.3
4,408,922 + ECD_04136 0.49 -0.2
4,408,922 + ECD_04136 0.49 -0.8
4,408,922 + ECD_04136 0.49 -0.4
4,408,922 + ECD_04136 0.49 +0.1
4,408,922 + ECD_04136 0.49 -0.3
4,408,922 + ECD_04136 0.49 -0.0
4,408,923 - ECD_04136 0.49 -0.2
4,408,923 - ECD_04136 0.49 +0.7
4,408,923 - ECD_04136 0.49 +0.6
4,408,923 - ECD_04136 0.49 +0.2
4,408,923 - ECD_04136 0.49 +0.9
4,408,923 - ECD_04136 0.49 -0.8
4,408,923 - ECD_04136 0.49 +1.3
4,408,923 - ECD_04136 0.49 +0.2
4,408,924 + ECD_04136 0.49 -0.4
4,408,931 - ECD_04136 0.49 -0.7
4,408,931 - ECD_04136 0.49 +0.4
4,408,954 - ECD_04136 0.51 +0.5
4,408,975 + ECD_04136 0.53 -0.1
4,409,032 + ECD_04136 0.58 +0.4
4,409,032 + ECD_04136 0.58 -0.2

Or see this region's nucleotide sequence