Strain Fitness in Escherichia coli BL21 around ECD_t00077

Experiment: N4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03855 and ECD_t00074 are separated by 361 nucleotidesECD_t00074 and ECD_t00075 are separated by 8 nucleotidesECD_t00075 and ECD_t00076 are separated by 116 nucleotidesECD_t00076 and ECD_t00077 are separated by 6 nucleotidesECD_t00077 and ECD_03856 are separated by 114 nucleotides ECD_03855: ECD_03855 - pantothenate kinase, at 4,082,127 to 4,083,077 _03855 ECD_t00074: ECD_t00074 - tRNA-Thr, at 4,083,439 to 4,083,514 _t00074 ECD_t00075: ECD_t00075 - tRNA-Tyr, at 4,083,523 to 4,083,607 _t00075 ECD_t00076: ECD_t00076 - tRNA-Gly, at 4,083,724 to 4,083,798 _t00076 ECD_t00077: ECD_t00077 - tRNA-Thr, at 4,083,805 to 4,083,880 _t00077 ECD_03856: ECD_03856 - translation elongation factor EF-Tu 2, at 4,083,995 to 4,085,179 _03856 Position (kb) 4083 4084Strain fitness (log2 ratio) -2 -1 0 1 2at 4083.070 kb on - strandat 4083.071 kb on + strandat 4083.072 kb on - strandat 4083.077 kb on + strandat 4083.078 kb on - strandat 4083.078 kb on - strandat 4083.078 kb on - strandat 4083.078 kb on - strandat 4083.078 kb on - strandat 4083.078 kb on - strandat 4083.078 kb on - strandat 4083.078 kb on - strandat 4083.098 kb on + strandat 4083.099 kb on - strandat 4083.099 kb on - strandat 4083.099 kb on - strandat 4083.099 kb on - strandat 4083.099 kb on - strandat 4083.190 kb on + strandat 4083.244 kb on - strandat 4083.431 kb on + strandat 4083.641 kb on + strandat 4083.641 kb on + strandat 4083.810 kb on + strandat 4083.812 kb on + strandat 4083.812 kb on + strandat 4083.812 kb on + strandat 4083.812 kb on + strandat 4083.824 kb on + strand, within ECD_t00077at 4083.914 kb on + strandat 4083.970 kb on + strandat 4083.981 kb on + strandat 4084.045 kb on + strandat 4084.066 kb on + strandat 4084.066 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N4
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4,083,070 - +0.3
4,083,071 + -0.6
4,083,072 - +0.5
4,083,077 + +0.9
4,083,078 - +0.1
4,083,078 - -0.2
4,083,078 - +0.1
4,083,078 - -0.9
4,083,078 - -0.4
4,083,078 - -2.3
4,083,078 - +0.0
4,083,078 - -0.0
4,083,098 + +0.8
4,083,099 - -0.3
4,083,099 - -0.8
4,083,099 - -0.3
4,083,099 - -0.1
4,083,099 - +0.3
4,083,190 + -0.8
4,083,244 - -0.1
4,083,431 + -1.1
4,083,641 + -0.1
4,083,641 + -0.8
4,083,810 + -1.5
4,083,812 + +1.8
4,083,812 + -0.3
4,083,812 + -0.2
4,083,812 + -0.5
4,083,824 + ECD_t00077 0.25 -2.5
4,083,914 + -0.1
4,083,970 + +0.0
4,083,981 + +0.1
4,084,045 + +0.3
4,084,066 + +1.4
4,084,066 + -0.5

Or see this region's nucleotide sequence