Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03855 and ECD_t00074 are separated by 361 nucleotides ECD_t00074 and ECD_t00075 are separated by 8 nucleotides ECD_t00075 and ECD_t00076 are separated by 116 nucleotides ECD_t00076 and ECD_t00077 are separated by 6 nucleotides ECD_t00077 and ECD_03856 are separated by 114 nucleotides
ECD_03855: ECD_03855 - pantothenate kinase, at 4,082,127 to 4,083,077
_03855
ECD_t00074: ECD_t00074 - tRNA-Thr, at 4,083,439 to 4,083,514
_t00074
ECD_t00075: ECD_t00075 - tRNA-Tyr, at 4,083,523 to 4,083,607
_t00075
ECD_t00076: ECD_t00076 - tRNA-Gly, at 4,083,724 to 4,083,798
_t00076
ECD_t00077: ECD_t00077 - tRNA-Thr, at 4,083,805 to 4,083,880
_t00077
ECD_03856: ECD_03856 - translation elongation factor EF-Tu 2, at 4,083,995 to 4,085,179
_03856
Position (kb)
4083
4084 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4083.070 kb on - strand at 4083.071 kb on + strand at 4083.072 kb on - strand at 4083.077 kb on + strand at 4083.078 kb on - strand at 4083.078 kb on - strand at 4083.078 kb on - strand at 4083.078 kb on - strand at 4083.078 kb on - strand at 4083.078 kb on - strand at 4083.078 kb on - strand at 4083.078 kb on - strand at 4083.098 kb on + strand at 4083.099 kb on - strand at 4083.099 kb on - strand at 4083.099 kb on - strand at 4083.099 kb on - strand at 4083.099 kb on - strand at 4083.190 kb on + strand at 4083.244 kb on - strand at 4083.431 kb on + strand at 4083.641 kb on + strand at 4083.641 kb on + strand at 4083.810 kb on + strand at 4083.812 kb on + strand at 4083.812 kb on + strand at 4083.812 kb on + strand at 4083.812 kb on + strand at 4083.824 kb on + strand, within ECD_t00077 at 4083.914 kb on + strand at 4083.970 kb on + strand at 4083.981 kb on + strand at 4084.045 kb on + strand at 4084.066 kb on + strand at 4084.066 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 4,083,070 - +0.3 4,083,071 + -0.6 4,083,072 - +0.5 4,083,077 + +0.9 4,083,078 - +0.1 4,083,078 - -0.2 4,083,078 - +0.1 4,083,078 - -0.9 4,083,078 - -0.4 4,083,078 - -2.3 4,083,078 - +0.0 4,083,078 - -0.0 4,083,098 + +0.8 4,083,099 - -0.3 4,083,099 - -0.8 4,083,099 - -0.3 4,083,099 - -0.1 4,083,099 - +0.3 4,083,190 + -0.8 4,083,244 - -0.1 4,083,431 + -1.1 4,083,641 + -0.1 4,083,641 + -0.8 4,083,810 + -1.5 4,083,812 + +1.8 4,083,812 + -0.3 4,083,812 + -0.2 4,083,812 + -0.5 4,083,824 + ECD_t00077 0.25 -2.5 4,083,914 + -0.1 4,083,970 + +0.0 4,083,981 + +0.1 4,084,045 + +0.3 4,084,066 + +1.4 4,084,066 + -0.5
Or see this region's nucleotide sequence