Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00240 and ECD_t00005 are separated by 114 nucleotides ECD_t00005 and ECD_00241 are separated by 126 nucleotides ECD_00241 and ECD_00242 overlap by 22 nucleotides
ECD_00240: ECD_00240 - gamma-glutamylphosphate reductase, at 265,998 to 267,251
_00240
ECD_t00005: ECD_t00005 - tRNA-Thr, at 267,366 to 267,441
_t00005
ECD_00241: ECD_00241 - putative transcriptional regulator, at 267,568 to 267,978
_00241
ECD_00242: ECD_00242 - moco insertion factor for PaoABC aldehyde oxidoreductase, at 267,957 to 268,913
_00242
Position (kb) 267
268 Strain fitness (log2 ratio) -2
-1
0
1 at 266.570 kb on + strand, within ECD_00240 at 266.574 kb on + strand, within ECD_00240 at 266.574 kb on + strand, within ECD_00240 at 266.574 kb on + strand, within ECD_00240 at 266.574 kb on + strand, within ECD_00240 at 266.662 kb on + strand, within ECD_00240 at 266.668 kb on + strand, within ECD_00240 at 266.679 kb on + strand, within ECD_00240 at 266.679 kb on + strand, within ECD_00240 at 266.679 kb on + strand, within ECD_00240 at 266.713 kb on + strand, within ECD_00240 at 266.713 kb on + strand, within ECD_00240 at 266.756 kb on + strand, within ECD_00240 at 266.756 kb on + strand, within ECD_00240 at 266.756 kb on + strand, within ECD_00240 at 266.756 kb on + strand, within ECD_00240 at 266.756 kb on + strand, within ECD_00240 at 266.757 kb on - strand, within ECD_00240 at 266.760 kb on - strand, within ECD_00240 at 266.816 kb on - strand, within ECD_00240 at 266.848 kb on + strand, within ECD_00240 at 267.090 kb on + strand, within ECD_00240 at 267.113 kb on + strand, within ECD_00240 at 267.210 kb on + strand at 267.210 kb on + strand at 267.210 kb on + strand at 267.211 kb on - strand at 267.211 kb on - strand at 267.234 kb on + strand at 267.250 kb on - strand at 267.250 kb on - strand at 267.253 kb on + strand at 267.253 kb on + strand at 267.373 kb on + strand at 267.373 kb on + strand at 267.444 kb on + strand at 267.453 kb on + strand at 267.469 kb on - strand at 267.510 kb on + strand at 267.510 kb on + strand at 267.510 kb on + strand at 267.511 kb on - strand at 267.511 kb on - strand at 267.651 kb on - strand, within ECD_00241 at 267.657 kb on - strand, within ECD_00241 at 267.697 kb on + strand, within ECD_00241 at 267.718 kb on - strand, within ECD_00241 at 267.720 kb on - strand, within ECD_00241 at 267.720 kb on - strand, within ECD_00241 at 267.720 kb on - strand, within ECD_00241 at 267.805 kb on - strand, within ECD_00241 at 267.805 kb on - strand, within ECD_00241 at 267.903 kb on + strand, within ECD_00241 at 267.904 kb on - strand, within ECD_00241 at 267.910 kb on - strand, within ECD_00241 at 267.910 kb on - strand, within ECD_00241 at 267.910 kb on - strand, within ECD_00241 at 268.003 kb on - strand at 268.003 kb on - strand at 268.003 kb on - strand at 268.003 kb on - strand at 268.040 kb on + strand at 268.174 kb on + strand, within ECD_00242 at 268.301 kb on + strand, within ECD_00242 at 268.312 kb on + strand, within ECD_00242
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 266,570 + ECD_00240 0.46 +0.3 266,574 + ECD_00240 0.46 +1.3 266,574 + ECD_00240 0.46 -0.5 266,574 + ECD_00240 0.46 -0.5 266,574 + ECD_00240 0.46 +1.1 266,662 + ECD_00240 0.53 +0.4 266,668 + ECD_00240 0.53 +0.9 266,679 + ECD_00240 0.54 -0.7 266,679 + ECD_00240 0.54 -0.3 266,679 + ECD_00240 0.54 +0.1 266,713 + ECD_00240 0.57 -0.0 266,713 + ECD_00240 0.57 +0.0 266,756 + ECD_00240 0.60 +0.7 266,756 + ECD_00240 0.60 +0.4 266,756 + ECD_00240 0.60 -0.3 266,756 + ECD_00240 0.60 +0.5 266,756 + ECD_00240 0.60 -1.0 266,757 - ECD_00240 0.61 +0.1 266,760 - ECD_00240 0.61 -0.5 266,816 - ECD_00240 0.65 -0.8 266,848 + ECD_00240 0.68 +0.0 267,090 + ECD_00240 0.87 +0.1 267,113 + ECD_00240 0.89 -1.1 267,210 + -0.6 267,210 + -0.4 267,210 + -0.2 267,211 - +0.6 267,211 - +0.3 267,234 + +0.3 267,250 - -0.1 267,250 - -0.1 267,253 + -0.3 267,253 + +0.5 267,373 + +0.8 267,373 + +0.5 267,444 + +0.6 267,453 + -1.8 267,469 - -1.5 267,510 + -0.4 267,510 + -0.4 267,510 + -0.7 267,511 - +1.4 267,511 - +0.6 267,651 - ECD_00241 0.20 -0.6 267,657 - ECD_00241 0.22 -0.5 267,697 + ECD_00241 0.31 +0.9 267,718 - ECD_00241 0.36 -0.1 267,720 - ECD_00241 0.37 -0.1 267,720 - ECD_00241 0.37 -0.6 267,720 - ECD_00241 0.37 -0.4 267,805 - ECD_00241 0.58 -1.7 267,805 - ECD_00241 0.58 -0.4 267,903 + ECD_00241 0.82 -0.8 267,904 - ECD_00241 0.82 +0.2 267,910 - ECD_00241 0.83 -0.7 267,910 - ECD_00241 0.83 -0.1 267,910 - ECD_00241 0.83 -0.3 268,003 - -0.2 268,003 - -0.1 268,003 - +0.3 268,003 - -0.1 268,040 + +0.3 268,174 + ECD_00242 0.23 -1.2 268,301 + ECD_00242 0.36 -0.7 268,312 + ECD_00242 0.37 -1.0
Or see this region's nucleotide sequence