Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01401 and ECD_04318 overlap by 4 nucleotides ECD_04318 and ECD_01402 are separated by 273 nucleotides ECD_01402 and ECD_01403 are separated by 85 nucleotides ECD_01403 and ECD_01404 are separated by 0 nucleotides
ECD_01401: ECD_01401 - gamma-aminobutyraldehyde dehydrogenase, at 1,469,641 to 1,471,065
_01401
ECD_04318: ECD_04318 - stress-induced small inner membrane enterobacterial protein, at 1,471,062 to 1,471,178
_04318
ECD_01402: ECD_01402 - DUF2566 family protein, at 1,471,452 to 1,471,625
_01402
ECD_01403: ECD_01403 - DUF2526 family protein, at 1,471,711 to 1,471,944
_01403
ECD_01404: ECD_01404 - DUF606 family inner membrane protein, at 1,471,945 to 1,472,394
_01404
Position (kb) 1471
1472 Strain fitness (log2 ratio) -1
0
1
2 at 1470.360 kb on + strand, within ECD_01401 at 1470.517 kb on + strand, within ECD_01401 at 1470.927 kb on + strand at 1471.069 kb on + strand at 1471.292 kb on - strand at 1471.630 kb on + strand at 1471.710 kb on + strand at 1471.787 kb on + strand, within ECD_01403 at 1471.787 kb on + strand, within ECD_01403 at 1471.817 kb on + strand, within ECD_01403 at 1472.173 kb on - strand, within ECD_01404 at 1472.173 kb on - strand, within ECD_01404 at 1472.173 kb on - strand, within ECD_01404
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,470,360 + ECD_01401 0.50 -1.6 1,470,517 + ECD_01401 0.61 -0.6 1,470,927 + -1.0 1,471,069 + +1.0 1,471,292 - +0.6 1,471,630 + -0.1 1,471,710 + -0.6 1,471,787 + ECD_01403 0.32 +2.5 1,471,787 + ECD_01403 0.32 +1.8 1,471,817 + ECD_01403 0.45 +0.7 1,472,173 - ECD_01404 0.51 +0.3 1,472,173 - ECD_01404 0.51 -0.1 1,472,173 - ECD_01404 0.51 +1.8
Or see this region's nucleotide sequence