Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04110 and ECD_04111 are separated by 205 nucleotides ECD_04111 and ECD_04112 are separated by 72 nucleotides ECD_04112 and ECD_04113 are separated by 12 nucleotides ECD_04113 and ECD_04114 are separated by 3 nucleotides
ECD_04110: ECD_04110 - magnesium transporter, at 4,379,267 to 4,381,963
_04110
ECD_04111: ECD_04111 - enamine/imine deaminase, reaction intermediate detoxification, at 4,382,169 to 4,382,555
_04111
ECD_04112: ECD_04112 - aspartate carbamoyltransferase, regulatory subunit, at 4,382,628 to 4,383,089
_04112
ECD_04113: ECD_04113 - aspartate carbamoyltransferase, catalytic subunit, at 4,383,102 to 4,384,037
_04113
ECD_04114: ECD_04114 - pyrBI operon leader peptide, at 4,384,041 to 4,384,175
_04114
Position (kb)
4382
4383
4384 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4381.723 kb on + strand at 4381.724 kb on - strand at 4381.871 kb on + strand at 4381.872 kb on - strand at 4381.904 kb on + strand at 4381.904 kb on + strand at 4381.906 kb on + strand at 4381.906 kb on + strand at 4381.906 kb on + strand at 4381.914 kb on + strand at 4381.914 kb on + strand at 4381.914 kb on + strand at 4381.915 kb on - strand at 4381.937 kb on + strand at 4381.968 kb on + strand at 4382.093 kb on - strand at 4382.134 kb on + strand at 4382.171 kb on - strand at 4382.284 kb on + strand, within ECD_04111 at 4382.285 kb on - strand, within ECD_04111 at 4382.285 kb on - strand, within ECD_04111 at 4382.339 kb on + strand, within ECD_04111 at 4382.385 kb on + strand, within ECD_04111 at 4382.480 kb on + strand, within ECD_04111 at 4382.481 kb on - strand, within ECD_04111 at 4382.481 kb on - strand, within ECD_04111 at 4382.481 kb on - strand, within ECD_04111 at 4382.503 kb on - strand, within ECD_04111 at 4382.503 kb on - strand, within ECD_04111 at 4382.568 kb on - strand at 4382.598 kb on - strand at 4382.617 kb on - strand at 4382.648 kb on + strand at 4382.671 kb on + strand at 4382.671 kb on + strand at 4382.671 kb on + strand at 4382.747 kb on + strand, within ECD_04112 at 4382.825 kb on - strand, within ECD_04112 at 4382.825 kb on - strand, within ECD_04112 at 4382.840 kb on + strand, within ECD_04112 at 4382.861 kb on - strand, within ECD_04112 at 4382.861 kb on - strand, within ECD_04112 at 4382.877 kb on + strand, within ECD_04112 at 4382.878 kb on - strand, within ECD_04112 at 4382.878 kb on - strand, within ECD_04112 at 4382.946 kb on + strand, within ECD_04112 at 4383.008 kb on + strand, within ECD_04112 at 4383.029 kb on + strand, within ECD_04112 at 4383.040 kb on - strand, within ECD_04112 at 4383.040 kb on - strand, within ECD_04112 at 4383.053 kb on + strand at 4383.056 kb on + strand at 4383.057 kb on - strand at 4383.057 kb on - strand at 4383.181 kb on + strand at 4383.200 kb on + strand, within ECD_04113 at 4383.358 kb on + strand, within ECD_04113 at 4383.392 kb on + strand, within ECD_04113 at 4383.393 kb on - strand, within ECD_04113 at 4383.393 kb on - strand, within ECD_04113 at 4383.446 kb on - strand, within ECD_04113 at 4383.446 kb on - strand, within ECD_04113 at 4383.481 kb on + strand, within ECD_04113 at 4383.482 kb on - strand, within ECD_04113 at 4383.670 kb on - strand, within ECD_04113 at 4383.730 kb on - strand, within ECD_04113 at 4383.742 kb on + strand, within ECD_04113 at 4383.742 kb on + strand, within ECD_04113 at 4383.743 kb on - strand, within ECD_04113 at 4383.743 kb on - strand, within ECD_04113 at 4383.800 kb on + strand, within ECD_04113 at 4384.010 kb on + strand at 4384.010 kb on + strand at 4384.011 kb on - strand at 4384.022 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 4,381,723 + -0.1 4,381,724 - +1.4 4,381,871 + +0.8 4,381,872 - +0.3 4,381,904 + +0.9 4,381,904 + +1.5 4,381,906 + +0.6 4,381,906 + -0.1 4,381,906 + +1.1 4,381,914 + +0.7 4,381,914 + +0.6 4,381,914 + +0.1 4,381,915 - +0.6 4,381,937 + -0.5 4,381,968 + -0.4 4,382,093 - -0.5 4,382,134 + -0.6 4,382,171 - -0.8 4,382,284 + ECD_04111 0.30 +1.3 4,382,285 - ECD_04111 0.30 -1.1 4,382,285 - ECD_04111 0.30 +0.6 4,382,339 + ECD_04111 0.44 -0.7 4,382,385 + ECD_04111 0.56 -0.9 4,382,480 + ECD_04111 0.80 -1.4 4,382,481 - ECD_04111 0.81 +0.6 4,382,481 - ECD_04111 0.81 -0.3 4,382,481 - ECD_04111 0.81 -0.3 4,382,503 - ECD_04111 0.86 -0.1 4,382,503 - ECD_04111 0.86 -0.1 4,382,568 - -0.7 4,382,598 - -0.2 4,382,617 - -0.2 4,382,648 + -0.3 4,382,671 + +0.2 4,382,671 + -1.1 4,382,671 + +0.2 4,382,747 + ECD_04112 0.26 +0.2 4,382,825 - ECD_04112 0.43 +0.6 4,382,825 - ECD_04112 0.43 -0.5 4,382,840 + ECD_04112 0.46 -0.7 4,382,861 - ECD_04112 0.50 +0.6 4,382,861 - ECD_04112 0.50 +0.0 4,382,877 + ECD_04112 0.54 -0.4 4,382,878 - ECD_04112 0.54 +1.0 4,382,878 - ECD_04112 0.54 -1.5 4,382,946 + ECD_04112 0.69 -0.0 4,383,008 + ECD_04112 0.82 +0.7 4,383,029 + ECD_04112 0.87 +0.2 4,383,040 - ECD_04112 0.89 -0.2 4,383,040 - ECD_04112 0.89 -0.3 4,383,053 + -0.2 4,383,056 + -0.4 4,383,057 - +0.3 4,383,057 - +0.6 4,383,181 + +0.5 4,383,200 + ECD_04113 0.10 -0.2 4,383,358 + ECD_04113 0.27 -0.3 4,383,392 + ECD_04113 0.31 +0.3 4,383,393 - ECD_04113 0.31 -0.2 4,383,393 - ECD_04113 0.31 -0.0 4,383,446 - ECD_04113 0.37 +0.1 4,383,446 - ECD_04113 0.37 -0.4 4,383,481 + ECD_04113 0.40 +0.4 4,383,482 - ECD_04113 0.41 +0.9 4,383,670 - ECD_04113 0.61 +0.1 4,383,730 - ECD_04113 0.67 +1.5 4,383,742 + ECD_04113 0.68 -3.4 4,383,742 + ECD_04113 0.68 +0.3 4,383,743 - ECD_04113 0.68 +1.3 4,383,743 - ECD_04113 0.68 -0.1 4,383,800 + ECD_04113 0.75 -0.1 4,384,010 + +0.2 4,384,010 + +0.3 4,384,011 - -0.2 4,384,022 - +0.9
Or see this region's nucleotide sequence