Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04079 and ECD_04080 are separated by 308 nucleotides ECD_04080 and ECD_04081 are separated by 44 nucleotides ECD_04081 and ECD_04082 are separated by 107 nucleotides
ECD_04079: ECD_04079 - FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase), at 4,342,299 to 4,342,919
_04079
ECD_04080: ECD_04080 - D-alanine/D-serine/glycine transporter, at 4,343,228 to 4,344,640
_04080
ECD_04081: ECD_04081 - iron-sulfur cluster repair protein RIC, at 4,344,685 to 4,345,347
_04081
ECD_04082: ECD_04082 - DMT transporter family inner membrane protein, at 4,345,455 to 4,346,420
_04082
Position (kb)
4343
4344
4345 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4342.259 kb on - strand at 4342.271 kb on - strand at 4342.276 kb on + strand at 4342.276 kb on + strand at 4342.276 kb on + strand at 4342.276 kb on + strand at 4342.277 kb on - strand at 4342.295 kb on + strand at 4342.557 kb on + strand, within ECD_04079 at 4342.655 kb on + strand, within ECD_04079 at 4342.655 kb on + strand, within ECD_04079 at 4342.656 kb on - strand, within ECD_04079 at 4342.677 kb on + strand, within ECD_04079 at 4342.677 kb on + strand, within ECD_04079 at 4342.677 kb on + strand, within ECD_04079 at 4342.840 kb on - strand, within ECD_04079 at 4343.062 kb on - strand at 4343.062 kb on - strand at 4343.106 kb on + strand at 4343.109 kb on + strand at 4343.129 kb on - strand at 4343.133 kb on - strand at 4343.135 kb on + strand at 4343.135 kb on + strand at 4343.135 kb on + strand at 4343.169 kb on + strand at 4343.169 kb on + strand at 4343.169 kb on + strand at 4343.232 kb on + strand at 4343.232 kb on + strand at 4343.232 kb on + strand at 4343.308 kb on + strand at 4343.308 kb on + strand at 4343.309 kb on - strand at 4343.317 kb on + strand at 4343.318 kb on - strand at 4343.318 kb on - strand at 4343.408 kb on - strand, within ECD_04080 at 4343.422 kb on + strand, within ECD_04080 at 4343.600 kb on + strand, within ECD_04080 at 4343.600 kb on + strand, within ECD_04080 at 4343.600 kb on + strand, within ECD_04080 at 4343.601 kb on - strand, within ECD_04080 at 4343.655 kb on + strand, within ECD_04080 at 4343.656 kb on - strand, within ECD_04080 at 4343.923 kb on + strand, within ECD_04080 at 4343.923 kb on + strand, within ECD_04080 at 4343.924 kb on - strand, within ECD_04080 at 4343.992 kb on + strand, within ECD_04080 at 4343.998 kb on + strand, within ECD_04080 at 4343.998 kb on + strand, within ECD_04080 at 4343.998 kb on + strand, within ECD_04080 at 4343.999 kb on - strand, within ECD_04080 at 4343.999 kb on - strand, within ECD_04080 at 4343.999 kb on - strand, within ECD_04080 at 4344.005 kb on + strand, within ECD_04080 at 4344.006 kb on - strand, within ECD_04080 at 4344.006 kb on - strand, within ECD_04080 at 4344.187 kb on + strand, within ECD_04080 at 4344.255 kb on + strand, within ECD_04080 at 4344.256 kb on - strand, within ECD_04080 at 4344.314 kb on + strand, within ECD_04080 at 4344.352 kb on + strand, within ECD_04080 at 4344.353 kb on - strand, within ECD_04080 at 4344.353 kb on - strand, within ECD_04080 at 4344.376 kb on + strand, within ECD_04080 at 4344.456 kb on - strand, within ECD_04080 at 4344.490 kb on - strand, within ECD_04080 at 4344.490 kb on - strand, within ECD_04080 at 4344.493 kb on + strand, within ECD_04080 at 4344.493 kb on + strand, within ECD_04080 at 4344.493 kb on + strand, within ECD_04080 at 4344.493 kb on + strand, within ECD_04080 at 4344.577 kb on + strand at 4344.604 kb on + strand at 4344.605 kb on - strand at 4344.681 kb on + strand at 4344.686 kb on + strand at 4344.715 kb on + strand at 4344.716 kb on - strand at 4344.716 kb on - strand at 4344.716 kb on - strand at 4344.716 kb on - strand at 4344.776 kb on + strand, within ECD_04081 at 4344.776 kb on + strand, within ECD_04081 at 4345.113 kb on + strand, within ECD_04081 at 4345.114 kb on - strand, within ECD_04081 at 4345.114 kb on - strand, within ECD_04081 at 4345.219 kb on - strand, within ECD_04081 at 4345.262 kb on + strand, within ECD_04081 at 4345.274 kb on + strand, within ECD_04081 at 4345.274 kb on + strand, within ECD_04081 at 4345.274 kb on + strand, within ECD_04081 at 4345.274 kb on + strand, within ECD_04081 at 4345.275 kb on - strand, within ECD_04081 at 4345.305 kb on + strand at 4345.325 kb on - strand at 4345.348 kb on - strand at 4345.348 kb on - strand at 4345.418 kb on + strand at 4345.422 kb on + strand at 4345.434 kb on - strand at 4345.434 kb on - strand at 4345.438 kb on - strand at 4345.438 kb on - strand at 4345.479 kb on + strand at 4345.480 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 4,342,259 - +0.8 4,342,271 - -0.4 4,342,276 + +0.1 4,342,276 + +0.1 4,342,276 + +0.2 4,342,276 + +0.7 4,342,277 - +0.2 4,342,295 + +2.0 4,342,557 + ECD_04079 0.42 +0.2 4,342,655 + ECD_04079 0.57 -1.0 4,342,655 + ECD_04079 0.57 -0.7 4,342,656 - ECD_04079 0.57 +0.2 4,342,677 + ECD_04079 0.61 +0.3 4,342,677 + ECD_04079 0.61 +0.7 4,342,677 + ECD_04079 0.61 +0.7 4,342,840 - ECD_04079 0.87 +0.2 4,343,062 - +0.2 4,343,062 - -0.1 4,343,106 + +1.5 4,343,109 + -0.2 4,343,129 - +0.2 4,343,133 - -0.1 4,343,135 + -2.5 4,343,135 + -0.4 4,343,135 + +0.8 4,343,169 + -1.2 4,343,169 + +0.4 4,343,169 + +0.6 4,343,232 + +0.3 4,343,232 + -0.8 4,343,232 + -0.9 4,343,308 + +0.7 4,343,308 + +0.7 4,343,309 - +0.3 4,343,317 + +1.1 4,343,318 - +0.8 4,343,318 - -0.9 4,343,408 - ECD_04080 0.13 -0.7 4,343,422 + ECD_04080 0.14 +0.7 4,343,600 + ECD_04080 0.26 -0.0 4,343,600 + ECD_04080 0.26 -1.7 4,343,600 + ECD_04080 0.26 -1.6 4,343,601 - ECD_04080 0.26 +0.1 4,343,655 + ECD_04080 0.30 -0.0 4,343,656 - ECD_04080 0.30 -0.5 4,343,923 + ECD_04080 0.49 -1.6 4,343,923 + ECD_04080 0.49 -0.2 4,343,924 - ECD_04080 0.49 -0.3 4,343,992 + ECD_04080 0.54 +0.6 4,343,998 + ECD_04080 0.54 -0.0 4,343,998 + ECD_04080 0.54 -0.2 4,343,998 + ECD_04080 0.54 -0.8 4,343,999 - ECD_04080 0.55 -0.2 4,343,999 - ECD_04080 0.55 +0.9 4,343,999 - ECD_04080 0.55 +0.7 4,344,005 + ECD_04080 0.55 +0.1 4,344,006 - ECD_04080 0.55 +0.2 4,344,006 - ECD_04080 0.55 -0.1 4,344,187 + ECD_04080 0.68 -0.5 4,344,255 + ECD_04080 0.73 -0.6 4,344,256 - ECD_04080 0.73 -0.1 4,344,314 + ECD_04080 0.77 -0.8 4,344,352 + ECD_04080 0.80 +0.3 4,344,353 - ECD_04080 0.80 -1.3 4,344,353 - ECD_04080 0.80 -0.4 4,344,376 + ECD_04080 0.81 -0.6 4,344,456 - ECD_04080 0.87 +0.8 4,344,490 - ECD_04080 0.89 +0.1 4,344,490 - ECD_04080 0.89 +0.0 4,344,493 + ECD_04080 0.90 -0.1 4,344,493 + ECD_04080 0.90 -1.3 4,344,493 + ECD_04080 0.90 -0.2 4,344,493 + ECD_04080 0.90 +0.6 4,344,577 + +0.6 4,344,604 + +0.1 4,344,605 - +1.8 4,344,681 + -0.1 4,344,686 + -0.4 4,344,715 + +0.2 4,344,716 - +0.3 4,344,716 - +0.4 4,344,716 - -0.6 4,344,716 - -1.0 4,344,776 + ECD_04081 0.14 +1.1 4,344,776 + ECD_04081 0.14 -0.2 4,345,113 + ECD_04081 0.65 +0.8 4,345,114 - ECD_04081 0.65 -0.4 4,345,114 - ECD_04081 0.65 -0.1 4,345,219 - ECD_04081 0.81 +0.6 4,345,262 + ECD_04081 0.87 -0.2 4,345,274 + ECD_04081 0.89 +0.3 4,345,274 + ECD_04081 0.89 +1.2 4,345,274 + ECD_04081 0.89 +1.2 4,345,274 + ECD_04081 0.89 +0.0 4,345,275 - ECD_04081 0.89 +1.0 4,345,305 + +0.8 4,345,325 - +1.1 4,345,348 - -0.9 4,345,348 - -0.3 4,345,418 + -0.1 4,345,422 + +0.4 4,345,434 - +0.2 4,345,434 - +0.9 4,345,438 - +0.5 4,345,438 - -0.6 4,345,479 + -0.2 4,345,480 - +1.1
Or see this region's nucleotide sequence