Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04034 and ECD_04035 overlap by 29 nucleotides ECD_04035 and ECD_04036 are separated by 18 nucleotides
ECD_04034: ECD_04034 - bifunctional NAD(P)H-hydrate repair enzyme; C-terminal domain ADP-dependent (S)-NAD(P)H-hydrate dehydratase and N-terminal domain NAD(P)H-hydrate epimerase, at 4,300,586 to 4,302,133
_04034
ECD_04035: ECD_04035 - tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; ADP binding protein, at 4,302,105 to 4,302,566
_04035
ECD_04036: ECD_04036 - N-acetylmuramoyl-l-alanine amidase II, at 4,302,585 to 4,303,922
_04036
Position (kb) 4302
4303 Strain fitness (log2 ratio) -1
0
1 at 4301.246 kb on - strand, within ECD_04034 at 4301.398 kb on + strand, within ECD_04034 at 4301.399 kb on - strand, within ECD_04034 at 4301.733 kb on + strand, within ECD_04034 at 4301.734 kb on - strand, within ECD_04034 at 4301.734 kb on - strand, within ECD_04034 at 4301.769 kb on + strand, within ECD_04034 at 4301.769 kb on + strand, within ECD_04034 at 4301.770 kb on - strand, within ECD_04034 at 4301.770 kb on - strand, within ECD_04034 at 4301.790 kb on + strand, within ECD_04034 at 4301.790 kb on + strand, within ECD_04034 at 4301.791 kb on - strand, within ECD_04034 at 4301.860 kb on - strand, within ECD_04034 at 4301.866 kb on + strand, within ECD_04034 at 4301.926 kb on + strand, within ECD_04034 at 4301.926 kb on + strand, within ECD_04034 at 4302.009 kb on + strand at 4302.066 kb on + strand at 4302.589 kb on + strand at 4302.589 kb on + strand at 4302.589 kb on + strand at 4302.590 kb on - strand at 4302.590 kb on - strand at 4302.591 kb on + strand at 4302.591 kb on + strand at 4302.592 kb on - strand at 4302.666 kb on - strand at 4302.872 kb on - strand, within ECD_04036 at 4302.939 kb on + strand, within ECD_04036 at 4302.939 kb on + strand, within ECD_04036 at 4302.939 kb on + strand, within ECD_04036 at 4302.939 kb on + strand, within ECD_04036 at 4302.940 kb on - strand, within ECD_04036 at 4302.940 kb on - strand, within ECD_04036 at 4303.080 kb on - strand, within ECD_04036 at 4303.106 kb on + strand, within ECD_04036 at 4303.107 kb on - strand, within ECD_04036 at 4303.107 kb on - strand, within ECD_04036 at 4303.110 kb on - strand, within ECD_04036 at 4303.110 kb on - strand, within ECD_04036 at 4303.154 kb on + strand, within ECD_04036 at 4303.160 kb on + strand, within ECD_04036 at 4303.293 kb on - strand, within ECD_04036 at 4303.325 kb on + strand, within ECD_04036 at 4303.325 kb on + strand, within ECD_04036 at 4303.358 kb on + strand, within ECD_04036 at 4303.358 kb on + strand, within ECD_04036 at 4303.359 kb on - strand, within ECD_04036 at 4303.559 kb on - strand, within ECD_04036
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 4,301,246 - ECD_04034 0.43 -1.0 4,301,398 + ECD_04034 0.52 -0.1 4,301,399 - ECD_04034 0.53 +0.1 4,301,733 + ECD_04034 0.74 -0.3 4,301,734 - ECD_04034 0.74 -0.4 4,301,734 - ECD_04034 0.74 -0.3 4,301,769 + ECD_04034 0.76 -0.6 4,301,769 + ECD_04034 0.76 -0.4 4,301,770 - ECD_04034 0.76 +0.5 4,301,770 - ECD_04034 0.76 -1.1 4,301,790 + ECD_04034 0.78 -0.8 4,301,790 + ECD_04034 0.78 -0.4 4,301,791 - ECD_04034 0.78 +0.0 4,301,860 - ECD_04034 0.82 +0.4 4,301,866 + ECD_04034 0.83 +0.2 4,301,926 + ECD_04034 0.87 +0.4 4,301,926 + ECD_04034 0.87 -0.4 4,302,009 + -0.1 4,302,066 + +0.0 4,302,589 + -0.5 4,302,589 + +0.3 4,302,589 + -0.7 4,302,590 - -0.1 4,302,590 - -0.3 4,302,591 + -0.9 4,302,591 + -0.6 4,302,592 - +0.4 4,302,666 - -0.6 4,302,872 - ECD_04036 0.21 -0.2 4,302,939 + ECD_04036 0.26 -0.1 4,302,939 + ECD_04036 0.26 +0.1 4,302,939 + ECD_04036 0.26 -0.7 4,302,939 + ECD_04036 0.26 -0.3 4,302,940 - ECD_04036 0.27 +0.7 4,302,940 - ECD_04036 0.27 -1.6 4,303,080 - ECD_04036 0.37 -0.2 4,303,106 + ECD_04036 0.39 -0.9 4,303,107 - ECD_04036 0.39 +0.4 4,303,107 - ECD_04036 0.39 -0.4 4,303,110 - ECD_04036 0.39 -0.0 4,303,110 - ECD_04036 0.39 -0.1 4,303,154 + ECD_04036 0.43 -0.9 4,303,160 + ECD_04036 0.43 +0.2 4,303,293 - ECD_04036 0.53 +0.1 4,303,325 + ECD_04036 0.55 -0.1 4,303,325 + ECD_04036 0.55 +0.3 4,303,358 + ECD_04036 0.58 +0.6 4,303,358 + ECD_04036 0.58 -0.2 4,303,359 - ECD_04036 0.58 +0.8 4,303,559 - ECD_04036 0.73 +1.0
Or see this region's nucleotide sequence