Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04033 and ECD_04034 overlap by 2 nucleotides ECD_04034 and ECD_04035 overlap by 29 nucleotides ECD_04035 and ECD_04036 are separated by 18 nucleotides
ECD_04033: ECD_04033 - epoxyqueuosine reductase, cobalamine-stimulated; queosine biosynthesis, at 4,299,448 to 4,300,587
_04033
ECD_04034: ECD_04034 - bifunctional NAD(P)H-hydrate repair enzyme; C-terminal domain ADP-dependent (S)-NAD(P)H-hydrate dehydratase and N-terminal domain NAD(P)H-hydrate epimerase, at 4,300,586 to 4,302,133
_04034
ECD_04035: ECD_04035 - tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; ADP binding protein, at 4,302,105 to 4,302,566
_04035
ECD_04036: ECD_04036 - N-acetylmuramoyl-l-alanine amidase II, at 4,302,585 to 4,303,922
_04036
Position (kb)
4300
4301
4302
4303 Strain fitness (log2 ratio)
-1
0
1 at 4299.663 kb on + strand, within ECD_04033 at 4299.663 kb on + strand, within ECD_04033 at 4299.815 kb on + strand, within ECD_04033 at 4299.834 kb on + strand, within ECD_04033 at 4299.923 kb on + strand, within ECD_04033 at 4299.930 kb on + strand, within ECD_04033 at 4299.930 kb on + strand, within ECD_04033 at 4299.931 kb on - strand, within ECD_04033 at 4299.931 kb on - strand, within ECD_04033 at 4299.951 kb on + strand, within ECD_04033 at 4299.952 kb on - strand, within ECD_04033 at 4299.952 kb on - strand, within ECD_04033 at 4299.952 kb on - strand, within ECD_04033 at 4299.953 kb on + strand, within ECD_04033 at 4299.953 kb on + strand, within ECD_04033 at 4299.985 kb on - strand, within ECD_04033 at 4299.990 kb on + strand, within ECD_04033 at 4300.101 kb on + strand, within ECD_04033 at 4300.101 kb on + strand, within ECD_04033 at 4300.113 kb on + strand, within ECD_04033 at 4300.113 kb on + strand, within ECD_04033 at 4300.113 kb on + strand, within ECD_04033 at 4300.113 kb on + strand, within ECD_04033 at 4300.114 kb on - strand, within ECD_04033 at 4300.114 kb on - strand, within ECD_04033 at 4300.114 kb on - strand, within ECD_04033 at 4300.114 kb on - strand, within ECD_04033 at 4300.114 kb on - strand, within ECD_04033 at 4300.144 kb on + strand, within ECD_04033 at 4300.343 kb on + strand, within ECD_04033 at 4300.343 kb on + strand, within ECD_04033 at 4300.343 kb on + strand, within ECD_04033 at 4300.344 kb on - strand, within ECD_04033 at 4300.384 kb on + strand, within ECD_04033 at 4300.445 kb on + strand, within ECD_04033 at 4300.445 kb on + strand, within ECD_04033 at 4300.506 kb on + strand at 4300.507 kb on - strand at 4300.510 kb on + strand at 4300.558 kb on + strand at 4300.597 kb on + strand at 4300.597 kb on + strand at 4300.597 kb on + strand at 4300.598 kb on - strand at 4300.598 kb on - strand at 4300.598 kb on - strand at 4300.618 kb on - strand at 4300.621 kb on + strand at 4300.621 kb on + strand at 4300.621 kb on + strand at 4300.621 kb on + strand at 4300.621 kb on + strand at 4300.621 kb on + strand at 4300.700 kb on + strand at 4300.700 kb on + strand at 4300.754 kb on + strand, within ECD_04034 at 4300.795 kb on + strand, within ECD_04034 at 4300.795 kb on + strand, within ECD_04034 at 4300.796 kb on - strand, within ECD_04034 at 4300.796 kb on - strand, within ECD_04034 at 4300.814 kb on + strand, within ECD_04034 at 4300.814 kb on + strand, within ECD_04034 at 4300.814 kb on + strand, within ECD_04034 at 4300.814 kb on + strand, within ECD_04034 at 4300.815 kb on - strand, within ECD_04034 at 4300.815 kb on - strand, within ECD_04034 at 4300.923 kb on + strand, within ECD_04034 at 4301.246 kb on - strand, within ECD_04034 at 4301.398 kb on + strand, within ECD_04034 at 4301.399 kb on - strand, within ECD_04034 at 4301.733 kb on + strand, within ECD_04034 at 4301.734 kb on - strand, within ECD_04034 at 4301.734 kb on - strand, within ECD_04034 at 4301.769 kb on + strand, within ECD_04034 at 4301.769 kb on + strand, within ECD_04034 at 4301.770 kb on - strand, within ECD_04034 at 4301.770 kb on - strand, within ECD_04034 at 4301.790 kb on + strand, within ECD_04034 at 4301.790 kb on + strand, within ECD_04034 at 4301.791 kb on - strand, within ECD_04034 at 4301.860 kb on - strand, within ECD_04034 at 4301.866 kb on + strand, within ECD_04034 at 4301.926 kb on + strand, within ECD_04034 at 4301.926 kb on + strand, within ECD_04034 at 4302.009 kb on + strand at 4302.066 kb on + strand at 4302.589 kb on + strand at 4302.589 kb on + strand at 4302.589 kb on + strand at 4302.590 kb on - strand at 4302.590 kb on - strand at 4302.591 kb on + strand at 4302.591 kb on + strand at 4302.592 kb on - strand at 4302.666 kb on - strand at 4302.872 kb on - strand, within ECD_04036 at 4302.939 kb on + strand, within ECD_04036 at 4302.939 kb on + strand, within ECD_04036 at 4302.939 kb on + strand, within ECD_04036 at 4302.939 kb on + strand, within ECD_04036 at 4302.940 kb on - strand, within ECD_04036 at 4302.940 kb on - strand, within ECD_04036 at 4303.080 kb on - strand, within ECD_04036 at 4303.106 kb on + strand, within ECD_04036 at 4303.107 kb on - strand, within ECD_04036 at 4303.107 kb on - strand, within ECD_04036 at 4303.110 kb on - strand, within ECD_04036 at 4303.110 kb on - strand, within ECD_04036
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 4,299,663 + ECD_04033 0.19 -0.4 4,299,663 + ECD_04033 0.19 -0.1 4,299,815 + ECD_04033 0.32 +0.0 4,299,834 + ECD_04033 0.34 +0.3 4,299,923 + ECD_04033 0.42 +1.0 4,299,930 + ECD_04033 0.42 +0.2 4,299,930 + ECD_04033 0.42 +0.7 4,299,931 - ECD_04033 0.42 -0.1 4,299,931 - ECD_04033 0.42 -0.1 4,299,951 + ECD_04033 0.44 +0.5 4,299,952 - ECD_04033 0.44 +0.5 4,299,952 - ECD_04033 0.44 -0.0 4,299,952 - ECD_04033 0.44 +0.1 4,299,953 + ECD_04033 0.44 -0.8 4,299,953 + ECD_04033 0.44 +0.5 4,299,985 - ECD_04033 0.47 -0.5 4,299,990 + ECD_04033 0.48 -0.4 4,300,101 + ECD_04033 0.57 +0.0 4,300,101 + ECD_04033 0.57 -0.2 4,300,113 + ECD_04033 0.58 -0.4 4,300,113 + ECD_04033 0.58 -0.1 4,300,113 + ECD_04033 0.58 -0.4 4,300,113 + ECD_04033 0.58 +1.1 4,300,114 - ECD_04033 0.58 -0.1 4,300,114 - ECD_04033 0.58 +0.3 4,300,114 - ECD_04033 0.58 +0.1 4,300,114 - ECD_04033 0.58 -0.7 4,300,114 - ECD_04033 0.58 -0.7 4,300,144 + ECD_04033 0.61 -1.1 4,300,343 + ECD_04033 0.79 +0.3 4,300,343 + ECD_04033 0.79 -0.7 4,300,343 + ECD_04033 0.79 +0.5 4,300,344 - ECD_04033 0.79 -0.4 4,300,384 + ECD_04033 0.82 +0.1 4,300,445 + ECD_04033 0.87 -0.2 4,300,445 + ECD_04033 0.87 +0.2 4,300,506 + -0.6 4,300,507 - -0.1 4,300,510 + -0.8 4,300,558 + -0.3 4,300,597 + +0.7 4,300,597 + +0.0 4,300,597 + +0.8 4,300,598 - +0.1 4,300,598 - +0.5 4,300,598 - +0.3 4,300,618 - +0.1 4,300,621 + +0.8 4,300,621 + -0.8 4,300,621 + +0.1 4,300,621 + -0.2 4,300,621 + -1.7 4,300,621 + -0.4 4,300,700 + +1.1 4,300,700 + +0.9 4,300,754 + ECD_04034 0.11 +0.1 4,300,795 + ECD_04034 0.14 +0.5 4,300,795 + ECD_04034 0.14 -0.7 4,300,796 - ECD_04034 0.14 +0.1 4,300,796 - ECD_04034 0.14 -0.4 4,300,814 + ECD_04034 0.15 +0.2 4,300,814 + ECD_04034 0.15 +0.6 4,300,814 + ECD_04034 0.15 -0.5 4,300,814 + ECD_04034 0.15 +1.3 4,300,815 - ECD_04034 0.15 -0.1 4,300,815 - ECD_04034 0.15 -0.3 4,300,923 + ECD_04034 0.22 -0.7 4,301,246 - ECD_04034 0.43 -1.0 4,301,398 + ECD_04034 0.52 -0.1 4,301,399 - ECD_04034 0.53 +0.1 4,301,733 + ECD_04034 0.74 -0.3 4,301,734 - ECD_04034 0.74 -0.4 4,301,734 - ECD_04034 0.74 -0.3 4,301,769 + ECD_04034 0.76 -0.6 4,301,769 + ECD_04034 0.76 -0.4 4,301,770 - ECD_04034 0.76 +0.5 4,301,770 - ECD_04034 0.76 -1.1 4,301,790 + ECD_04034 0.78 -0.8 4,301,790 + ECD_04034 0.78 -0.4 4,301,791 - ECD_04034 0.78 +0.0 4,301,860 - ECD_04034 0.82 +0.4 4,301,866 + ECD_04034 0.83 +0.2 4,301,926 + ECD_04034 0.87 +0.4 4,301,926 + ECD_04034 0.87 -0.4 4,302,009 + -0.1 4,302,066 + -0.0 4,302,589 + -0.5 4,302,589 + +0.3 4,302,589 + -0.7 4,302,590 - -0.1 4,302,590 - -0.3 4,302,591 + -0.9 4,302,591 + -0.6 4,302,592 - +0.4 4,302,666 - -0.6 4,302,872 - ECD_04036 0.21 -0.2 4,302,939 + ECD_04036 0.26 -0.1 4,302,939 + ECD_04036 0.26 +0.1 4,302,939 + ECD_04036 0.26 -0.7 4,302,939 + ECD_04036 0.26 -0.3 4,302,940 - ECD_04036 0.27 +0.7 4,302,940 - ECD_04036 0.27 -1.6 4,303,080 - ECD_04036 0.37 -0.2 4,303,106 + ECD_04036 0.39 -0.9 4,303,107 - ECD_04036 0.39 +0.4 4,303,107 - ECD_04036 0.39 -0.4 4,303,110 - ECD_04036 0.39 -0.0 4,303,110 - ECD_04036 0.39 -0.1
Or see this region's nucleotide sequence