Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03993 and ECD_03994 are separated by 77 nucleotides ECD_03994 and ECD_03995 are separated by 570 nucleotides
ECD_03993: ECD_03993 - anaerobic class I fumarate hydratase (fumarase B), at 4,252,760 to 4,254,406
_03993
ECD_03994: ECD_03994 - C4-dicarboxylate transporter, anaerobic; DcuS co-sensor, at 4,254,484 to 4,255,824
_03994
ECD_03995: ECD_03995 - response regulator in two-component regulatory system with DcuS, at 4,256,395 to 4,257,114
_03995
Position (kb)
4254
4255
4256 Strain fitness (log2 ratio)
-1
0
1
2 at 4253.534 kb on - strand, within ECD_03993 at 4253.889 kb on - strand, within ECD_03993 at 4253.921 kb on - strand, within ECD_03993 at 4253.943 kb on + strand, within ECD_03993 at 4253.943 kb on + strand, within ECD_03993 at 4253.944 kb on - strand, within ECD_03993 at 4253.991 kb on + strand, within ECD_03993 at 4253.991 kb on + strand, within ECD_03993 at 4253.991 kb on + strand, within ECD_03993 at 4253.991 kb on + strand, within ECD_03993 at 4253.992 kb on - strand, within ECD_03993 at 4253.992 kb on - strand, within ECD_03993 at 4253.992 kb on - strand, within ECD_03993 at 4253.992 kb on - strand, within ECD_03993 at 4253.998 kb on + strand, within ECD_03993 at 4253.999 kb on - strand, within ECD_03993 at 4254.000 kb on + strand, within ECD_03993 at 4254.153 kb on + strand, within ECD_03993 at 4254.154 kb on - strand, within ECD_03993 at 4254.154 kb on - strand, within ECD_03993 at 4254.154 kb on - strand, within ECD_03993 at 4254.339 kb on - strand at 4254.339 kb on - strand at 4254.339 kb on - strand at 4254.339 kb on - strand at 4254.342 kb on + strand at 4254.343 kb on - strand at 4254.343 kb on - strand at 4254.385 kb on - strand at 4254.406 kb on + strand at 4254.407 kb on - strand at 4254.407 kb on - strand at 4254.428 kb on + strand at 4254.429 kb on - strand at 4254.485 kb on + strand at 4254.485 kb on + strand at 4254.486 kb on - strand at 4254.486 kb on - strand at 4254.486 kb on - strand at 4254.487 kb on + strand at 4254.487 kb on + strand at 4254.497 kb on + strand at 4254.497 kb on + strand at 4254.656 kb on + strand, within ECD_03994 at 4254.657 kb on - strand, within ECD_03994 at 4254.692 kb on + strand, within ECD_03994 at 4254.693 kb on - strand, within ECD_03994 at 4254.795 kb on - strand, within ECD_03994 at 4254.849 kb on + strand, within ECD_03994 at 4254.849 kb on + strand, within ECD_03994 at 4254.849 kb on + strand, within ECD_03994 at 4254.850 kb on - strand, within ECD_03994 at 4254.850 kb on - strand, within ECD_03994 at 4254.942 kb on + strand, within ECD_03994 at 4254.943 kb on - strand, within ECD_03994 at 4254.972 kb on + strand, within ECD_03994 at 4254.973 kb on - strand, within ECD_03994 at 4254.996 kb on + strand, within ECD_03994 at 4254.996 kb on + strand, within ECD_03994 at 4255.167 kb on - strand, within ECD_03994 at 4255.172 kb on + strand, within ECD_03994 at 4255.172 kb on + strand, within ECD_03994 at 4255.173 kb on - strand, within ECD_03994 at 4255.173 kb on - strand, within ECD_03994 at 4255.458 kb on + strand, within ECD_03994 at 4255.472 kb on + strand, within ECD_03994 at 4255.472 kb on + strand, within ECD_03994 at 4255.473 kb on - strand, within ECD_03994 at 4255.473 kb on - strand, within ECD_03994 at 4255.530 kb on + strand, within ECD_03994 at 4255.562 kb on + strand, within ECD_03994 at 4255.562 kb on + strand, within ECD_03994 at 4255.562 kb on + strand, within ECD_03994 at 4255.563 kb on - strand, within ECD_03994 at 4255.690 kb on - strand, within ECD_03994 at 4255.741 kb on + strand at 4255.745 kb on - strand at 4255.778 kb on + strand at 4255.790 kb on - strand at 4255.796 kb on - strand at 4255.951 kb on - strand at 4256.292 kb on + strand at 4256.522 kb on + strand, within ECD_03995 at 4256.527 kb on - strand, within ECD_03995 at 4256.623 kb on + strand, within ECD_03995 at 4256.692 kb on + strand, within ECD_03995 at 4256.718 kb on - strand, within ECD_03995 at 4256.720 kb on + strand, within ECD_03995
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 4,253,534 - ECD_03993 0.47 +0.2 4,253,889 - ECD_03993 0.69 -0.9 4,253,921 - ECD_03993 0.70 +1.0 4,253,943 + ECD_03993 0.72 -0.4 4,253,943 + ECD_03993 0.72 +0.3 4,253,944 - ECD_03993 0.72 +0.1 4,253,991 + ECD_03993 0.75 +0.1 4,253,991 + ECD_03993 0.75 +1.0 4,253,991 + ECD_03993 0.75 +0.0 4,253,991 + ECD_03993 0.75 -0.2 4,253,992 - ECD_03993 0.75 +0.0 4,253,992 - ECD_03993 0.75 -1.0 4,253,992 - ECD_03993 0.75 -0.6 4,253,992 - ECD_03993 0.75 +0.2 4,253,998 + ECD_03993 0.75 -0.9 4,253,999 - ECD_03993 0.75 +1.0 4,254,000 + ECD_03993 0.75 -0.3 4,254,153 + ECD_03993 0.85 -0.1 4,254,154 - ECD_03993 0.85 +0.2 4,254,154 - ECD_03993 0.85 -0.6 4,254,154 - ECD_03993 0.85 +0.3 4,254,339 - +0.4 4,254,339 - +0.1 4,254,339 - +0.4 4,254,339 - -1.5 4,254,342 + +0.6 4,254,343 - +0.6 4,254,343 - +0.4 4,254,385 - -0.6 4,254,406 + +0.1 4,254,407 - -0.0 4,254,407 - +2.2 4,254,428 + -0.8 4,254,429 - -1.4 4,254,485 + -0.5 4,254,485 + +0.1 4,254,486 - +0.6 4,254,486 - -0.4 4,254,486 - -0.9 4,254,487 + +0.5 4,254,487 + -0.8 4,254,497 + +0.7 4,254,497 + +0.2 4,254,656 + ECD_03994 0.13 +0.0 4,254,657 - ECD_03994 0.13 -0.8 4,254,692 + ECD_03994 0.16 -0.2 4,254,693 - ECD_03994 0.16 +0.7 4,254,795 - ECD_03994 0.23 +0.6 4,254,849 + ECD_03994 0.27 +0.3 4,254,849 + ECD_03994 0.27 +0.2 4,254,849 + ECD_03994 0.27 +0.0 4,254,850 - ECD_03994 0.27 +0.3 4,254,850 - ECD_03994 0.27 +0.3 4,254,942 + ECD_03994 0.34 +0.0 4,254,943 - ECD_03994 0.34 +0.1 4,254,972 + ECD_03994 0.36 -0.4 4,254,973 - ECD_03994 0.36 -0.1 4,254,996 + ECD_03994 0.38 -0.0 4,254,996 + ECD_03994 0.38 -0.3 4,255,167 - ECD_03994 0.51 -0.3 4,255,172 + ECD_03994 0.51 +1.2 4,255,172 + ECD_03994 0.51 +0.1 4,255,173 - ECD_03994 0.51 -0.5 4,255,173 - ECD_03994 0.51 -0.7 4,255,458 + ECD_03994 0.73 -0.5 4,255,472 + ECD_03994 0.74 -0.1 4,255,472 + ECD_03994 0.74 +0.8 4,255,473 - ECD_03994 0.74 -0.4 4,255,473 - ECD_03994 0.74 -0.5 4,255,530 + ECD_03994 0.78 -0.1 4,255,562 + ECD_03994 0.80 -0.0 4,255,562 + ECD_03994 0.80 -0.5 4,255,562 + ECD_03994 0.80 +0.1 4,255,563 - ECD_03994 0.80 -0.8 4,255,690 - ECD_03994 0.90 -1.1 4,255,741 + +0.8 4,255,745 - +0.6 4,255,778 + -1.1 4,255,790 - -0.7 4,255,796 - +0.9 4,255,951 - -0.8 4,256,292 + -0.3 4,256,522 + ECD_03995 0.18 +0.7 4,256,527 - ECD_03995 0.18 -0.1 4,256,623 + ECD_03995 0.32 +0.4 4,256,692 + ECD_03995 0.41 +0.4 4,256,718 - ECD_03995 0.45 +0.4 4,256,720 + ECD_03995 0.45 +0.1
Or see this region's nucleotide sequence