Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03956 and ECD_03957 overlap by 17 nucleotides ECD_03957 and ECD_03958 are separated by 10 nucleotides ECD_03958 and ECD_03959 overlap by 22 nucleotides
ECD_03956: ECD_03956 - D-allose kinase, at 4,214,057 to 4,214,986
_03956
ECD_03957: ECD_03957 - allulose-6-phosphate 3-epimerase, at 4,214,970 to 4,215,665
_03957
ECD_03958: ECD_03958 - D-allose ABC transporter permease, at 4,215,676 to 4,216,656
_03958
ECD_03959: ECD_03959 - D-allose ABC transporter ATPase, at 4,216,635 to 4,218,167
_03959
Position (kb)
4215
4216
4217 Strain fitness (log2 ratio)
-2
-1
0
1 at 4214.700 kb on + strand, within ECD_03956 at 4214.701 kb on - strand, within ECD_03956 at 4214.741 kb on - strand, within ECD_03956 at 4214.741 kb on - strand, within ECD_03956 at 4214.753 kb on - strand, within ECD_03956 at 4214.758 kb on + strand, within ECD_03956 at 4214.994 kb on + strand at 4215.291 kb on - strand, within ECD_03957 at 4215.292 kb on + strand, within ECD_03957 at 4215.292 kb on + strand, within ECD_03957 at 4215.292 kb on + strand, within ECD_03957 at 4215.293 kb on - strand, within ECD_03957 at 4215.293 kb on - strand, within ECD_03957 at 4215.295 kb on + strand, within ECD_03957 at 4215.295 kb on + strand, within ECD_03957 at 4215.295 kb on + strand, within ECD_03957 at 4215.296 kb on - strand, within ECD_03957 at 4215.296 kb on - strand, within ECD_03957 at 4215.296 kb on - strand, within ECD_03957 at 4215.296 kb on - strand, within ECD_03957 at 4215.451 kb on + strand, within ECD_03957 at 4215.452 kb on - strand, within ECD_03957 at 4215.452 kb on - strand, within ECD_03957 at 4215.452 kb on - strand, within ECD_03957 at 4215.519 kb on + strand, within ECD_03957 at 4215.519 kb on + strand, within ECD_03957 at 4215.520 kb on - strand, within ECD_03957 at 4215.584 kb on - strand, within ECD_03957 at 4215.603 kb on - strand at 4215.681 kb on + strand at 4215.681 kb on + strand at 4215.681 kb on + strand at 4215.682 kb on - strand at 4215.682 kb on - strand at 4215.718 kb on + strand at 4215.719 kb on - strand at 4215.744 kb on - strand at 4215.747 kb on - strand at 4215.754 kb on + strand at 4215.755 kb on - strand at 4215.755 kb on - strand at 4215.878 kb on + strand, within ECD_03958 at 4215.879 kb on - strand, within ECD_03958 at 4215.879 kb on - strand, within ECD_03958 at 4215.879 kb on - strand, within ECD_03958 at 4215.972 kb on + strand, within ECD_03958 at 4216.014 kb on - strand, within ECD_03958 at 4216.014 kb on - strand, within ECD_03958 at 4216.014 kb on - strand, within ECD_03958 at 4216.046 kb on + strand, within ECD_03958 at 4216.046 kb on + strand, within ECD_03958 at 4216.046 kb on + strand, within ECD_03958 at 4216.047 kb on - strand, within ECD_03958 at 4216.047 kb on - strand, within ECD_03958 at 4216.105 kb on + strand, within ECD_03958 at 4216.105 kb on + strand, within ECD_03958 at 4216.105 kb on + strand, within ECD_03958 at 4216.138 kb on + strand, within ECD_03958 at 4216.139 kb on - strand, within ECD_03958 at 4216.181 kb on + strand, within ECD_03958 at 4216.182 kb on - strand, within ECD_03958 at 4216.183 kb on + strand, within ECD_03958 at 4216.261 kb on + strand, within ECD_03958 at 4216.497 kb on + strand, within ECD_03958 at 4216.501 kb on - strand, within ECD_03958 at 4216.501 kb on - strand, within ECD_03958 at 4216.580 kb on + strand at 4216.581 kb on - strand at 4216.581 kb on - strand at 4216.636 kb on + strand at 4216.662 kb on - strand at 4216.761 kb on + strand at 4217.006 kb on + strand, within ECD_03959 at 4217.006 kb on + strand, within ECD_03959 at 4217.143 kb on + strand, within ECD_03959 at 4217.143 kb on + strand, within ECD_03959 at 4217.143 kb on + strand, within ECD_03959 at 4217.144 kb on - strand, within ECD_03959 at 4217.144 kb on - strand, within ECD_03959 at 4217.144 kb on - strand, within ECD_03959 at 4217.189 kb on + strand, within ECD_03959 at 4217.189 kb on + strand, within ECD_03959 at 4217.189 kb on + strand, within ECD_03959 at 4217.190 kb on - strand, within ECD_03959 at 4217.190 kb on - strand, within ECD_03959 at 4217.229 kb on - strand, within ECD_03959 at 4217.295 kb on + strand, within ECD_03959 at 4217.315 kb on + strand, within ECD_03959 at 4217.315 kb on + strand, within ECD_03959 at 4217.316 kb on - strand, within ECD_03959 at 4217.316 kb on - strand, within ECD_03959 at 4217.459 kb on + strand, within ECD_03959 at 4217.481 kb on + strand, within ECD_03959 at 4217.481 kb on + strand, within ECD_03959 at 4217.482 kb on - strand, within ECD_03959 at 4217.482 kb on - strand, within ECD_03959 at 4217.484 kb on + strand, within ECD_03959 at 4217.485 kb on - strand, within ECD_03959 at 4217.568 kb on - strand, within ECD_03959 at 4217.568 kb on - strand, within ECD_03959 at 4217.569 kb on + strand, within ECD_03959 at 4217.620 kb on + strand, within ECD_03959 at 4217.620 kb on + strand, within ECD_03959
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 4,214,700 + ECD_03956 0.69 +1.2 4,214,701 - ECD_03956 0.69 -1.3 4,214,741 - ECD_03956 0.74 -0.3 4,214,741 - ECD_03956 0.74 +1.1 4,214,753 - ECD_03956 0.75 -0.0 4,214,758 + ECD_03956 0.75 -0.1 4,214,994 + -1.1 4,215,291 - ECD_03957 0.46 -0.7 4,215,292 + ECD_03957 0.46 +1.3 4,215,292 + ECD_03957 0.46 +1.5 4,215,292 + ECD_03957 0.46 -0.7 4,215,293 - ECD_03957 0.46 +0.1 4,215,293 - ECD_03957 0.46 -0.9 4,215,295 + ECD_03957 0.47 -0.0 4,215,295 + ECD_03957 0.47 +0.3 4,215,295 + ECD_03957 0.47 -0.4 4,215,296 - ECD_03957 0.47 +0.5 4,215,296 - ECD_03957 0.47 -0.1 4,215,296 - ECD_03957 0.47 -0.9 4,215,296 - ECD_03957 0.47 -0.0 4,215,451 + ECD_03957 0.69 +1.2 4,215,452 - ECD_03957 0.69 +0.0 4,215,452 - ECD_03957 0.69 +0.9 4,215,452 - ECD_03957 0.69 -0.3 4,215,519 + ECD_03957 0.79 +0.2 4,215,519 + ECD_03957 0.79 -0.5 4,215,520 - ECD_03957 0.79 -0.4 4,215,584 - ECD_03957 0.88 -0.2 4,215,603 - +1.1 4,215,681 + -0.8 4,215,681 + -0.1 4,215,681 + -0.0 4,215,682 - -0.2 4,215,682 - -0.4 4,215,718 + +0.1 4,215,719 - -0.4 4,215,744 - +0.4 4,215,747 - -0.3 4,215,754 + -0.7 4,215,755 - -0.9 4,215,755 - +0.5 4,215,878 + ECD_03958 0.21 +0.6 4,215,879 - ECD_03958 0.21 +0.0 4,215,879 - ECD_03958 0.21 +1.1 4,215,879 - ECD_03958 0.21 -1.5 4,215,972 + ECD_03958 0.30 -0.4 4,216,014 - ECD_03958 0.34 +1.2 4,216,014 - ECD_03958 0.34 +0.1 4,216,014 - ECD_03958 0.34 +0.2 4,216,046 + ECD_03958 0.38 -1.0 4,216,046 + ECD_03958 0.38 -0.5 4,216,046 + ECD_03958 0.38 -0.1 4,216,047 - ECD_03958 0.38 -0.4 4,216,047 - ECD_03958 0.38 -0.3 4,216,105 + ECD_03958 0.44 -0.4 4,216,105 + ECD_03958 0.44 -0.6 4,216,105 + ECD_03958 0.44 -0.2 4,216,138 + ECD_03958 0.47 -0.9 4,216,139 - ECD_03958 0.47 -0.0 4,216,181 + ECD_03958 0.51 -0.7 4,216,182 - ECD_03958 0.52 -0.7 4,216,183 + ECD_03958 0.52 -0.1 4,216,261 + ECD_03958 0.60 +0.1 4,216,497 + ECD_03958 0.84 -1.7 4,216,501 - ECD_03958 0.84 -0.3 4,216,501 - ECD_03958 0.84 +0.1 4,216,580 + +1.5 4,216,581 - +0.2 4,216,581 - -0.3 4,216,636 + -0.8 4,216,662 - -0.1 4,216,761 + +0.6 4,217,006 + ECD_03959 0.24 -0.1 4,217,006 + ECD_03959 0.24 +0.2 4,217,143 + ECD_03959 0.33 -0.2 4,217,143 + ECD_03959 0.33 -0.1 4,217,143 + ECD_03959 0.33 -1.3 4,217,144 - ECD_03959 0.33 -0.2 4,217,144 - ECD_03959 0.33 +0.4 4,217,144 - ECD_03959 0.33 +0.3 4,217,189 + ECD_03959 0.36 +0.3 4,217,189 + ECD_03959 0.36 -0.8 4,217,189 + ECD_03959 0.36 +0.8 4,217,190 - ECD_03959 0.36 -0.6 4,217,190 - ECD_03959 0.36 -0.5 4,217,229 - ECD_03959 0.39 +0.5 4,217,295 + ECD_03959 0.43 +0.8 4,217,315 + ECD_03959 0.44 +0.9 4,217,315 + ECD_03959 0.44 -0.6 4,217,316 - ECD_03959 0.44 +0.3 4,217,316 - ECD_03959 0.44 +0.5 4,217,459 + ECD_03959 0.54 +0.5 4,217,481 + ECD_03959 0.55 -0.2 4,217,481 + ECD_03959 0.55 +0.2 4,217,482 - ECD_03959 0.55 -0.6 4,217,482 - ECD_03959 0.55 +0.0 4,217,484 + ECD_03959 0.55 -0.5 4,217,485 - ECD_03959 0.55 +0.6 4,217,568 - ECD_03959 0.61 +0.3 4,217,568 - ECD_03959 0.61 +0.5 4,217,569 + ECD_03959 0.61 -0.3 4,217,620 + ECD_03959 0.64 -1.2 4,217,620 + ECD_03959 0.64 -2.1
Or see this region's nucleotide sequence