Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03933 and ECD_03934 are separated by 2 nucleotides ECD_03934 and ECD_03935 are separated by 85 nucleotides ECD_03935 and ECD_03936 are separated by 545 nucleotides
ECD_03933: ECD_03933 - putative membrane-anchored cyclic-di-GMP phosphodiesterase, at 4,182,881 to 4,184,467
_03933
ECD_03934: ECD_03934 - superoxide response regulon transcriptional activator; autoregulator, at 4,184,470 to 4,184,793
_03934
ECD_03935: ECD_03935 - redox-sensitive transcriptional activator of soxS; autorepressor, at 4,184,879 to 4,185,343
_03935
ECD_03936: ECD_03936 - guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter, at 4,185,889 to 4,187,238
_03936
Position (kb) 4184
4185
4186 Strain fitness (log2 ratio) -1
0
1 at 4183.889 kb on + strand, within ECD_03933 at 4183.957 kb on + strand, within ECD_03933 at 4183.958 kb on - strand, within ECD_03933 at 4184.129 kb on + strand, within ECD_03933 at 4184.182 kb on + strand, within ECD_03933 at 4184.302 kb on - strand, within ECD_03933 at 4184.342 kb on - strand at 4184.370 kb on - strand at 4184.417 kb on - strand at 4184.472 kb on - strand at 4184.549 kb on + strand, within ECD_03934 at 4184.550 kb on - strand, within ECD_03934 at 4184.550 kb on - strand, within ECD_03934 at 4184.614 kb on + strand, within ECD_03934 at 4184.794 kb on - strand at 4185.130 kb on + strand, within ECD_03935 at 4185.130 kb on + strand, within ECD_03935 at 4185.131 kb on - strand, within ECD_03935 at 4185.199 kb on + strand, within ECD_03935 at 4185.200 kb on - strand, within ECD_03935 at 4185.235 kb on + strand, within ECD_03935 at 4185.235 kb on + strand, within ECD_03935 at 4185.236 kb on - strand, within ECD_03935 at 4185.236 kb on - strand, within ECD_03935 at 4185.363 kb on - strand at 4185.363 kb on - strand at 4185.393 kb on + strand at 4185.405 kb on - strand at 4185.482 kb on - strand at 4185.487 kb on + strand at 4185.750 kb on + strand at 4185.817 kb on + strand at 4185.888 kb on + strand at 4185.888 kb on + strand at 4185.889 kb on - strand at 4185.889 kb on - strand at 4186.009 kb on + strand at 4186.032 kb on + strand, within ECD_03936 at 4186.032 kb on + strand, within ECD_03936 at 4186.033 kb on - strand, within ECD_03936 at 4186.033 kb on - strand, within ECD_03936 at 4186.105 kb on - strand, within ECD_03936 at 4186.200 kb on + strand, within ECD_03936 at 4186.200 kb on + strand, within ECD_03936 at 4186.200 kb on + strand, within ECD_03936 at 4186.200 kb on + strand, within ECD_03936 at 4186.200 kb on + strand, within ECD_03936 at 4186.200 kb on + strand, within ECD_03936 at 4186.201 kb on - strand, within ECD_03936 at 4186.201 kb on - strand, within ECD_03936 at 4186.209 kb on - strand, within ECD_03936 at 4186.209 kb on - strand, within ECD_03936 at 4186.251 kb on + strand, within ECD_03936
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 4,183,889 + ECD_03933 0.64 -1.5 4,183,957 + ECD_03933 0.68 -0.0 4,183,958 - ECD_03933 0.68 -0.2 4,184,129 + ECD_03933 0.79 +0.1 4,184,182 + ECD_03933 0.82 +0.7 4,184,302 - ECD_03933 0.90 +0.4 4,184,342 - -0.2 4,184,370 - -0.1 4,184,417 - +1.1 4,184,472 - -0.4 4,184,549 + ECD_03934 0.24 +0.0 4,184,550 - ECD_03934 0.25 +0.1 4,184,550 - ECD_03934 0.25 +0.7 4,184,614 + ECD_03934 0.44 +0.0 4,184,794 - +0.3 4,185,130 + ECD_03935 0.54 +0.1 4,185,130 + ECD_03935 0.54 -1.1 4,185,131 - ECD_03935 0.54 +0.3 4,185,199 + ECD_03935 0.69 -0.7 4,185,200 - ECD_03935 0.69 -0.7 4,185,235 + ECD_03935 0.77 +0.3 4,185,235 + ECD_03935 0.77 +0.1 4,185,236 - ECD_03935 0.77 -0.8 4,185,236 - ECD_03935 0.77 -0.4 4,185,363 - -0.1 4,185,363 - +0.5 4,185,393 + -0.1 4,185,405 - -0.2 4,185,482 - +0.7 4,185,487 + +0.2 4,185,750 + -0.6 4,185,817 + -0.3 4,185,888 + -0.1 4,185,888 + -0.0 4,185,889 - +0.1 4,185,889 - -0.2 4,186,009 + -0.7 4,186,032 + ECD_03936 0.11 -0.0 4,186,032 + ECD_03936 0.11 +0.1 4,186,033 - ECD_03936 0.11 +0.0 4,186,033 - ECD_03936 0.11 -1.1 4,186,105 - ECD_03936 0.16 +0.2 4,186,200 + ECD_03936 0.23 +0.2 4,186,200 + ECD_03936 0.23 +1.0 4,186,200 + ECD_03936 0.23 +0.5 4,186,200 + ECD_03936 0.23 +0.3 4,186,200 + ECD_03936 0.23 +0.5 4,186,200 + ECD_03936 0.23 -1.1 4,186,201 - ECD_03936 0.23 +0.1 4,186,201 - ECD_03936 0.23 +0.6 4,186,209 - ECD_03936 0.24 +1.0 4,186,209 - ECD_03936 0.24 +0.2 4,186,251 + ECD_03936 0.27 +0.1
Or see this region's nucleotide sequence