Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03714 and ECD_03715 are separated by 94 nucleotides ECD_03715 and ECD_03716 are separated by 5 nucleotides ECD_03716 and ECD_03717 are separated by 256 nucleotides
ECD_03714: ECD_03714 - hypothetical protein, at 3,913,274 to 3,914,833
_03714
ECD_03715: ECD_03715 - hypothetical protein, at 3,914,928 to 3,915,788
_03715
ECD_03716: ECD_03716 - hypothetical protein, at 3,915,794 to 3,916,462
_03716
ECD_03717: ECD_03717 - putative carboxymethylenebutenolidase, at 3,916,719 to 3,917,528
_03717
Position (kb)
3915
3916
3917 Strain fitness (log2 ratio)
-2
-1
0
1 at 3914.839 kb on + strand at 3914.891 kb on + strand at 3914.982 kb on + strand at 3914.982 kb on + strand at 3914.982 kb on + strand at 3914.982 kb on + strand at 3914.983 kb on - strand at 3914.983 kb on - strand at 3915.070 kb on - strand, within ECD_03715 at 3915.118 kb on + strand, within ECD_03715 at 3915.118 kb on + strand, within ECD_03715 at 3915.233 kb on - strand, within ECD_03715 at 3915.244 kb on + strand, within ECD_03715 at 3915.244 kb on + strand, within ECD_03715 at 3915.245 kb on - strand, within ECD_03715 at 3915.245 kb on - strand, within ECD_03715 at 3915.273 kb on - strand, within ECD_03715 at 3915.333 kb on + strand, within ECD_03715 at 3915.384 kb on - strand, within ECD_03715 at 3915.384 kb on - strand, within ECD_03715 at 3915.384 kb on - strand, within ECD_03715 at 3915.384 kb on - strand, within ECD_03715 at 3915.550 kb on - strand, within ECD_03715 at 3915.637 kb on + strand, within ECD_03715 at 3915.638 kb on - strand, within ECD_03715 at 3915.638 kb on - strand, within ECD_03715 at 3915.690 kb on + strand, within ECD_03715 at 3915.691 kb on - strand, within ECD_03715 at 3915.702 kb on - strand, within ECD_03715 at 3915.710 kb on + strand at 3915.711 kb on - strand at 3915.720 kb on + strand at 3915.720 kb on + strand at 3915.720 kb on + strand at 3915.783 kb on + strand at 3915.814 kb on + strand at 3915.880 kb on - strand, within ECD_03716 at 3915.937 kb on - strand, within ECD_03716 at 3915.937 kb on - strand, within ECD_03716 at 3915.988 kb on + strand, within ECD_03716 at 3915.988 kb on + strand, within ECD_03716 at 3916.001 kb on + strand, within ECD_03716 at 3916.001 kb on + strand, within ECD_03716 at 3916.001 kb on + strand, within ECD_03716 at 3916.002 kb on - strand, within ECD_03716 at 3916.040 kb on + strand, within ECD_03716 at 3916.040 kb on + strand, within ECD_03716 at 3916.041 kb on - strand, within ECD_03716 at 3916.041 kb on - strand, within ECD_03716 at 3916.054 kb on - strand, within ECD_03716 at 3916.054 kb on - strand, within ECD_03716 at 3916.076 kb on - strand, within ECD_03716 at 3916.224 kb on - strand, within ECD_03716 at 3916.224 kb on - strand, within ECD_03716 at 3916.255 kb on + strand, within ECD_03716 at 3916.261 kb on + strand, within ECD_03716 at 3916.261 kb on + strand, within ECD_03716 at 3916.261 kb on + strand, within ECD_03716 at 3916.261 kb on + strand, within ECD_03716 at 3916.297 kb on + strand, within ECD_03716 at 3916.297 kb on + strand, within ECD_03716 at 3916.297 kb on + strand, within ECD_03716 at 3916.298 kb on - strand, within ECD_03716 at 3916.298 kb on - strand, within ECD_03716 at 3916.298 kb on - strand, within ECD_03716 at 3916.298 kb on - strand, within ECD_03716 at 3916.320 kb on - strand, within ECD_03716 at 3916.465 kb on + strand at 3916.465 kb on + strand at 3916.692 kb on + strand at 3916.692 kb on + strand at 3916.712 kb on + strand at 3916.712 kb on + strand at 3916.727 kb on + strand at 3916.735 kb on + strand at 3916.735 kb on + strand at 3916.735 kb on + strand at 3916.735 kb on + strand at 3916.735 kb on + strand at 3916.735 kb on + strand at 3916.735 kb on + strand at 3916.735 kb on + strand at 3916.736 kb on - strand at 3916.736 kb on - strand at 3916.736 kb on - strand at 3916.736 kb on - strand at 3916.736 kb on - strand at 3916.736 kb on - strand at 3916.792 kb on + strand at 3916.792 kb on + strand at 3916.792 kb on + strand at 3916.793 kb on - strand at 3916.793 kb on - strand at 3916.793 kb on - strand at 3916.793 kb on - strand at 3916.793 kb on - strand at 3916.793 kb on - strand at 3916.930 kb on + strand, within ECD_03717 at 3916.930 kb on + strand, within ECD_03717 at 3916.930 kb on + strand, within ECD_03717 at 3916.931 kb on - strand, within ECD_03717 at 3916.932 kb on + strand, within ECD_03717 at 3916.932 kb on + strand, within ECD_03717 at 3916.932 kb on + strand, within ECD_03717 at 3916.932 kb on + strand, within ECD_03717 at 3916.933 kb on - strand, within ECD_03717 at 3916.933 kb on - strand, within ECD_03717 at 3917.001 kb on - strand, within ECD_03717 at 3917.040 kb on + strand, within ECD_03717 at 3917.040 kb on + strand, within ECD_03717 at 3917.040 kb on + strand, within ECD_03717 at 3917.041 kb on - strand, within ECD_03717 at 3917.062 kb on + strand, within ECD_03717 at 3917.075 kb on + strand, within ECD_03717 at 3917.075 kb on + strand, within ECD_03717 at 3917.076 kb on - strand, within ECD_03717 at 3917.076 kb on - strand, within ECD_03717 at 3917.106 kb on + strand, within ECD_03717 at 3917.107 kb on - strand, within ECD_03717 at 3917.254 kb on + strand, within ECD_03717 at 3917.254 kb on + strand, within ECD_03717 at 3917.316 kb on - strand, within ECD_03717 at 3917.346 kb on + strand, within ECD_03717 at 3917.346 kb on + strand, within ECD_03717 at 3917.347 kb on - strand, within ECD_03717
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 3,914,839 + -0.9 3,914,891 + -1.3 3,914,982 + +1.3 3,914,982 + +0.1 3,914,982 + -0.0 3,914,982 + -0.5 3,914,983 - +0.1 3,914,983 - +0.2 3,915,070 - ECD_03715 0.16 -0.1 3,915,118 + ECD_03715 0.22 -0.3 3,915,118 + ECD_03715 0.22 -1.5 3,915,233 - ECD_03715 0.35 -0.5 3,915,244 + ECD_03715 0.37 -0.0 3,915,244 + ECD_03715 0.37 +1.2 3,915,245 - ECD_03715 0.37 +0.4 3,915,245 - ECD_03715 0.37 -0.2 3,915,273 - ECD_03715 0.40 +0.8 3,915,333 + ECD_03715 0.47 -1.4 3,915,384 - ECD_03715 0.53 -0.0 3,915,384 - ECD_03715 0.53 +0.1 3,915,384 - ECD_03715 0.53 -0.5 3,915,384 - ECD_03715 0.53 -1.4 3,915,550 - ECD_03715 0.72 +1.3 3,915,637 + ECD_03715 0.82 +0.6 3,915,638 - ECD_03715 0.82 +0.3 3,915,638 - ECD_03715 0.82 -0.7 3,915,690 + ECD_03715 0.89 +1.5 3,915,691 - ECD_03715 0.89 -0.2 3,915,702 - ECD_03715 0.90 +0.1 3,915,710 + -0.6 3,915,711 - -0.5 3,915,720 + +0.7 3,915,720 + -0.1 3,915,720 + -0.6 3,915,783 + +0.8 3,915,814 + -1.4 3,915,880 - ECD_03716 0.13 +0.6 3,915,937 - ECD_03716 0.21 +0.8 3,915,937 - ECD_03716 0.21 -0.1 3,915,988 + ECD_03716 0.29 -0.4 3,915,988 + ECD_03716 0.29 +1.0 3,916,001 + ECD_03716 0.31 +0.7 3,916,001 + ECD_03716 0.31 +0.1 3,916,001 + ECD_03716 0.31 +1.7 3,916,002 - ECD_03716 0.31 -1.2 3,916,040 + ECD_03716 0.37 +0.8 3,916,040 + ECD_03716 0.37 -0.3 3,916,041 - ECD_03716 0.37 +0.2 3,916,041 - ECD_03716 0.37 +1.6 3,916,054 - ECD_03716 0.39 -0.8 3,916,054 - ECD_03716 0.39 +0.3 3,916,076 - ECD_03716 0.42 -1.6 3,916,224 - ECD_03716 0.64 +0.1 3,916,224 - ECD_03716 0.64 -0.9 3,916,255 + ECD_03716 0.69 +0.5 3,916,261 + ECD_03716 0.70 -0.2 3,916,261 + ECD_03716 0.70 +0.5 3,916,261 + ECD_03716 0.70 +0.7 3,916,261 + ECD_03716 0.70 -0.7 3,916,297 + ECD_03716 0.75 -1.3 3,916,297 + ECD_03716 0.75 -0.6 3,916,297 + ECD_03716 0.75 +0.6 3,916,298 - ECD_03716 0.75 +0.3 3,916,298 - ECD_03716 0.75 -1.3 3,916,298 - ECD_03716 0.75 +0.3 3,916,298 - ECD_03716 0.75 +0.7 3,916,320 - ECD_03716 0.79 +0.5 3,916,465 + +0.2 3,916,465 + +0.8 3,916,692 + -0.2 3,916,692 + +1.1 3,916,712 + -0.1 3,916,712 + -0.7 3,916,727 + +0.6 3,916,735 + +0.3 3,916,735 + -1.2 3,916,735 + +0.4 3,916,735 + +1.1 3,916,735 + -0.1 3,916,735 + +1.0 3,916,735 + +0.1 3,916,735 + -0.3 3,916,736 - -0.4 3,916,736 - -1.0 3,916,736 - -0.0 3,916,736 - +0.1 3,916,736 - -0.1 3,916,736 - -1.4 3,916,792 + +0.5 3,916,792 + +0.0 3,916,792 + +0.2 3,916,793 - -0.4 3,916,793 - -0.2 3,916,793 - -0.4 3,916,793 - -0.9 3,916,793 - +0.2 3,916,793 - -0.5 3,916,930 + ECD_03717 0.26 +0.4 3,916,930 + ECD_03717 0.26 +0.8 3,916,930 + ECD_03717 0.26 -0.3 3,916,931 - ECD_03717 0.26 +1.6 3,916,932 + ECD_03717 0.26 +0.5 3,916,932 + ECD_03717 0.26 -0.1 3,916,932 + ECD_03717 0.26 -0.3 3,916,932 + ECD_03717 0.26 +0.6 3,916,933 - ECD_03717 0.26 +0.8 3,916,933 - ECD_03717 0.26 -0.2 3,917,001 - ECD_03717 0.35 -0.4 3,917,040 + ECD_03717 0.40 +0.4 3,917,040 + ECD_03717 0.40 +0.1 3,917,040 + ECD_03717 0.40 -0.0 3,917,041 - ECD_03717 0.40 +0.5 3,917,062 + ECD_03717 0.42 +0.6 3,917,075 + ECD_03717 0.44 +0.2 3,917,075 + ECD_03717 0.44 -1.5 3,917,076 - ECD_03717 0.44 +0.8 3,917,076 - ECD_03717 0.44 -0.8 3,917,106 + ECD_03717 0.48 -1.6 3,917,107 - ECD_03717 0.48 +1.4 3,917,254 + ECD_03717 0.66 +0.2 3,917,254 + ECD_03717 0.66 -0.2 3,917,316 - ECD_03717 0.74 +0.1 3,917,346 + ECD_03717 0.77 -0.1 3,917,346 + ECD_03717 0.77 -2.3 3,917,347 - ECD_03717 0.78 +0.1
Or see this region's nucleotide sequence