Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03690 and ECD_03691 are separated by 82 nucleotides ECD_03691 and ECD_03692 are separated by 369 nucleotides
ECD_03690: ECD_03690 - hypothetical protein, at 3,890,477 to 3,891,379
_03690
ECD_03691: ECD_03691 - DUF2233 family protein, at 3,891,462 to 3,892,226
_03691
ECD_03692: ECD_03692 - magnesium/nickel/cobalt transporter, at 3,892,596 to 3,893,546
_03692
Position (kb)
3891
3892
3893 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3890.478 kb on + strand at 3890.478 kb on + strand at 3890.478 kb on + strand at 3890.479 kb on - strand at 3890.479 kb on - strand at 3890.479 kb on - strand at 3890.479 kb on - strand at 3890.512 kb on + strand at 3890.579 kb on + strand, within ECD_03690 at 3890.579 kb on + strand, within ECD_03690 at 3890.580 kb on - strand, within ECD_03690 at 3890.580 kb on - strand, within ECD_03690 at 3890.592 kb on + strand, within ECD_03690 at 3890.592 kb on + strand, within ECD_03690 at 3890.592 kb on + strand, within ECD_03690 at 3890.593 kb on - strand, within ECD_03690 at 3890.638 kb on - strand, within ECD_03690 at 3890.684 kb on + strand, within ECD_03690 at 3890.907 kb on + strand, within ECD_03690 at 3890.907 kb on + strand, within ECD_03690 at 3890.908 kb on - strand, within ECD_03690 at 3890.908 kb on - strand, within ECD_03690 at 3890.913 kb on + strand, within ECD_03690 at 3890.913 kb on + strand, within ECD_03690 at 3890.914 kb on - strand, within ECD_03690 at 3890.914 kb on - strand, within ECD_03690 at 3890.914 kb on - strand, within ECD_03690 at 3890.914 kb on - strand, within ECD_03690 at 3890.914 kb on - strand, within ECD_03690 at 3890.915 kb on + strand, within ECD_03690 at 3890.915 kb on + strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.916 kb on - strand, within ECD_03690 at 3890.935 kb on + strand, within ECD_03690 at 3890.936 kb on - strand, within ECD_03690 at 3890.936 kb on - strand, within ECD_03690 at 3890.937 kb on + strand, within ECD_03690 at 3891.052 kb on - strand, within ECD_03690 at 3891.190 kb on - strand, within ECD_03690 at 3891.190 kb on - strand, within ECD_03690 at 3891.398 kb on - strand at 3891.455 kb on - strand at 3891.463 kb on + strand at 3891.463 kb on + strand at 3891.533 kb on + strand at 3891.534 kb on - strand at 3891.535 kb on + strand at 3891.535 kb on + strand at 3891.535 kb on + strand at 3891.535 kb on + strand at 3891.535 kb on + strand at 3891.535 kb on + strand at 3891.536 kb on - strand at 3891.536 kb on - strand at 3891.536 kb on - strand at 3891.536 kb on - strand at 3891.536 kb on - strand at 3891.539 kb on + strand, within ECD_03691 at 3891.539 kb on + strand, within ECD_03691 at 3891.539 kb on + strand, within ECD_03691 at 3891.539 kb on + strand, within ECD_03691 at 3891.539 kb on + strand, within ECD_03691 at 3891.539 kb on + strand, within ECD_03691 at 3891.539 kb on + strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.540 kb on - strand, within ECD_03691 at 3891.563 kb on - strand, within ECD_03691 at 3891.599 kb on - strand, within ECD_03691 at 3891.663 kb on - strand, within ECD_03691 at 3891.714 kb on - strand, within ECD_03691 at 3891.727 kb on - strand, within ECD_03691 at 3891.832 kb on + strand, within ECD_03691 at 3891.832 kb on + strand, within ECD_03691 at 3891.833 kb on - strand, within ECD_03691 at 3891.833 kb on - strand, within ECD_03691 at 3891.833 kb on - strand, within ECD_03691 at 3891.833 kb on - strand, within ECD_03691 at 3891.917 kb on - strand, within ECD_03691 at 3891.934 kb on + strand, within ECD_03691 at 3891.934 kb on + strand, within ECD_03691 at 3891.935 kb on - strand, within ECD_03691 at 3891.946 kb on + strand, within ECD_03691 at 3891.946 kb on + strand, within ECD_03691 at 3891.946 kb on + strand, within ECD_03691 at 3891.947 kb on - strand, within ECD_03691 at 3891.947 kb on - strand, within ECD_03691 at 3891.986 kb on + strand, within ECD_03691 at 3892.012 kb on - strand, within ECD_03691 at 3892.048 kb on + strand, within ECD_03691 at 3892.049 kb on - strand, within ECD_03691 at 3892.049 kb on - strand, within ECD_03691 at 3892.082 kb on + strand, within ECD_03691 at 3892.083 kb on - strand, within ECD_03691 at 3892.083 kb on - strand, within ECD_03691 at 3892.084 kb on + strand, within ECD_03691 at 3892.084 kb on + strand, within ECD_03691 at 3892.084 kb on + strand, within ECD_03691 at 3892.085 kb on - strand, within ECD_03691 at 3892.085 kb on - strand, within ECD_03691 at 3892.152 kb on + strand at 3892.227 kb on + strand at 3892.229 kb on + strand at 3892.229 kb on + strand at 3892.229 kb on + strand at 3892.229 kb on + strand at 3892.229 kb on + strand at 3892.229 kb on + strand at 3892.230 kb on - strand at 3892.300 kb on + strand at 3892.301 kb on - strand at 3892.350 kb on + strand at 3892.350 kb on + strand at 3892.372 kb on + strand at 3892.372 kb on + strand at 3892.372 kb on + strand at 3892.406 kb on + strand at 3892.406 kb on + strand at 3892.442 kb on + strand at 3892.464 kb on + strand at 3892.522 kb on - strand at 3892.571 kb on - strand at 3892.576 kb on - strand at 3892.877 kb on + strand, within ECD_03692 at 3892.877 kb on + strand, within ECD_03692 at 3892.877 kb on + strand, within ECD_03692 at 3892.877 kb on + strand, within ECD_03692 at 3892.878 kb on - strand, within ECD_03692 at 3892.878 kb on - strand, within ECD_03692 at 3892.878 kb on - strand, within ECD_03692 at 3892.902 kb on - strand, within ECD_03692 at 3892.939 kb on - strand, within ECD_03692 at 3892.939 kb on - strand, within ECD_03692 at 3892.970 kb on - strand, within ECD_03692 at 3893.045 kb on + strand, within ECD_03692 at 3893.046 kb on - strand, within ECD_03692 at 3893.046 kb on - strand, within ECD_03692 at 3893.049 kb on + strand, within ECD_03692 at 3893.049 kb on + strand, within ECD_03692 at 3893.049 kb on + strand, within ECD_03692 at 3893.049 kb on + strand, within ECD_03692 at 3893.081 kb on + strand, within ECD_03692 at 3893.081 kb on + strand, within ECD_03692 at 3893.106 kb on + strand, within ECD_03692 at 3893.106 kb on + strand, within ECD_03692 at 3893.106 kb on + strand, within ECD_03692 at 3893.107 kb on - strand, within ECD_03692 at 3893.208 kb on - strand, within ECD_03692
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 3,890,478 + +0.1 3,890,478 + +0.4 3,890,478 + -0.2 3,890,479 - -0.2 3,890,479 - -0.1 3,890,479 - +0.1 3,890,479 - +0.3 3,890,512 + +0.3 3,890,579 + ECD_03690 0.11 +0.0 3,890,579 + ECD_03690 0.11 +0.5 3,890,580 - ECD_03690 0.11 -0.3 3,890,580 - ECD_03690 0.11 -1.3 3,890,592 + ECD_03690 0.13 +0.1 3,890,592 + ECD_03690 0.13 -0.5 3,890,592 + ECD_03690 0.13 -0.3 3,890,593 - ECD_03690 0.13 -0.1 3,890,638 - ECD_03690 0.18 -0.3 3,890,684 + ECD_03690 0.23 -0.5 3,890,907 + ECD_03690 0.48 -0.7 3,890,907 + ECD_03690 0.48 +0.9 3,890,908 - ECD_03690 0.48 +0.1 3,890,908 - ECD_03690 0.48 +0.5 3,890,913 + ECD_03690 0.48 +0.4 3,890,913 + ECD_03690 0.48 -0.4 3,890,914 - ECD_03690 0.48 -0.6 3,890,914 - ECD_03690 0.48 +0.6 3,890,914 - ECD_03690 0.48 -0.4 3,890,914 - ECD_03690 0.48 +1.1 3,890,914 - ECD_03690 0.48 -1.1 3,890,915 + ECD_03690 0.49 -0.5 3,890,915 + ECD_03690 0.49 -0.6 3,890,916 - ECD_03690 0.49 -0.2 3,890,916 - ECD_03690 0.49 -0.1 3,890,916 - ECD_03690 0.49 +0.1 3,890,916 - ECD_03690 0.49 -0.4 3,890,916 - ECD_03690 0.49 +0.6 3,890,916 - ECD_03690 0.49 -0.4 3,890,916 - ECD_03690 0.49 -0.0 3,890,916 - ECD_03690 0.49 -0.4 3,890,916 - ECD_03690 0.49 +1.3 3,890,935 + ECD_03690 0.51 +0.2 3,890,936 - ECD_03690 0.51 -0.5 3,890,936 - ECD_03690 0.51 -0.9 3,890,937 + ECD_03690 0.51 +0.5 3,891,052 - ECD_03690 0.64 +0.4 3,891,190 - ECD_03690 0.79 -0.5 3,891,190 - ECD_03690 0.79 -0.2 3,891,398 - -1.4 3,891,455 - +0.9 3,891,463 + +0.4 3,891,463 + -0.4 3,891,533 + -0.1 3,891,534 - +0.1 3,891,535 + -1.1 3,891,535 + +1.1 3,891,535 + +2.0 3,891,535 + +0.4 3,891,535 + -0.4 3,891,535 + +0.7 3,891,536 - +0.4 3,891,536 - +0.1 3,891,536 - -0.4 3,891,536 - +1.6 3,891,536 - -0.0 3,891,539 + ECD_03691 0.10 -0.1 3,891,539 + ECD_03691 0.10 -0.6 3,891,539 + ECD_03691 0.10 +0.2 3,891,539 + ECD_03691 0.10 -1.0 3,891,539 + ECD_03691 0.10 -0.4 3,891,539 + ECD_03691 0.10 +0.1 3,891,539 + ECD_03691 0.10 -0.5 3,891,540 - ECD_03691 0.10 -1.1 3,891,540 - ECD_03691 0.10 -1.7 3,891,540 - ECD_03691 0.10 +0.8 3,891,540 - ECD_03691 0.10 -0.2 3,891,540 - ECD_03691 0.10 -0.4 3,891,540 - ECD_03691 0.10 -0.8 3,891,540 - ECD_03691 0.10 -0.6 3,891,540 - ECD_03691 0.10 +0.3 3,891,540 - ECD_03691 0.10 -0.5 3,891,540 - ECD_03691 0.10 +0.1 3,891,540 - ECD_03691 0.10 -0.3 3,891,540 - ECD_03691 0.10 -0.2 3,891,540 - ECD_03691 0.10 -0.6 3,891,563 - ECD_03691 0.13 -1.2 3,891,599 - ECD_03691 0.18 +0.1 3,891,663 - ECD_03691 0.26 -0.1 3,891,714 - ECD_03691 0.33 +0.4 3,891,727 - ECD_03691 0.35 +0.0 3,891,832 + ECD_03691 0.48 +0.2 3,891,832 + ECD_03691 0.48 +1.1 3,891,833 - ECD_03691 0.48 +0.3 3,891,833 - ECD_03691 0.48 -0.7 3,891,833 - ECD_03691 0.48 +0.3 3,891,833 - ECD_03691 0.48 -0.9 3,891,917 - ECD_03691 0.59 -2.1 3,891,934 + ECD_03691 0.62 -0.1 3,891,934 + ECD_03691 0.62 -0.2 3,891,935 - ECD_03691 0.62 +0.1 3,891,946 + ECD_03691 0.63 -1.5 3,891,946 + ECD_03691 0.63 +0.4 3,891,946 + ECD_03691 0.63 -0.2 3,891,947 - ECD_03691 0.63 +1.1 3,891,947 - ECD_03691 0.63 +0.2 3,891,986 + ECD_03691 0.68 -0.7 3,892,012 - ECD_03691 0.72 +0.3 3,892,048 + ECD_03691 0.77 -1.3 3,892,049 - ECD_03691 0.77 -0.4 3,892,049 - ECD_03691 0.77 -0.5 3,892,082 + ECD_03691 0.81 +0.7 3,892,083 - ECD_03691 0.81 +0.7 3,892,083 - ECD_03691 0.81 -0.5 3,892,084 + ECD_03691 0.81 +1.0 3,892,084 + ECD_03691 0.81 -0.2 3,892,084 + ECD_03691 0.81 -0.9 3,892,085 - ECD_03691 0.81 -0.1 3,892,085 - ECD_03691 0.81 -0.4 3,892,152 + -0.7 3,892,227 + +2.3 3,892,229 + +0.3 3,892,229 + +1.7 3,892,229 + +0.1 3,892,229 + +0.5 3,892,229 + -0.5 3,892,229 + +0.1 3,892,230 - -0.2 3,892,300 + +0.2 3,892,301 - -0.1 3,892,350 + +0.8 3,892,350 + -0.6 3,892,372 + +0.7 3,892,372 + -0.3 3,892,372 + -0.3 3,892,406 + -0.1 3,892,406 + +0.0 3,892,442 + -0.4 3,892,464 + +1.1 3,892,522 - -1.0 3,892,571 - -0.5 3,892,576 - -2.2 3,892,877 + ECD_03692 0.30 -0.3 3,892,877 + ECD_03692 0.30 -1.3 3,892,877 + ECD_03692 0.30 -2.0 3,892,877 + ECD_03692 0.30 -1.8 3,892,878 - ECD_03692 0.30 +1.8 3,892,878 - ECD_03692 0.30 +0.0 3,892,878 - ECD_03692 0.30 -1.3 3,892,902 - ECD_03692 0.32 -1.9 3,892,939 - ECD_03692 0.36 -0.6 3,892,939 - ECD_03692 0.36 +0.5 3,892,970 - ECD_03692 0.39 +0.3 3,893,045 + ECD_03692 0.47 +1.8 3,893,046 - ECD_03692 0.47 -1.2 3,893,046 - ECD_03692 0.47 -2.1 3,893,049 + ECD_03692 0.48 -0.5 3,893,049 + ECD_03692 0.48 -1.9 3,893,049 + ECD_03692 0.48 -1.6 3,893,049 + ECD_03692 0.48 -0.7 3,893,081 + ECD_03692 0.51 -0.5 3,893,081 + ECD_03692 0.51 +1.1 3,893,106 + ECD_03692 0.54 -1.9 3,893,106 + ECD_03692 0.54 -0.2 3,893,106 + ECD_03692 0.54 -2.1 3,893,107 - ECD_03692 0.54 -0.7 3,893,208 - ECD_03692 0.64 -0.2
Or see this region's nucleotide sequence