Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03552 and ECD_03553 overlap by 1 nucleotides ECD_03553 and ECD_03554 are separated by 74 nucleotides ECD_03554 and ECD_03555 are separated by 3 nucleotides
ECD_03552: ECD_03552 - sensory histidine kinase in two-component regulatory sytem with UhpA, at 3,737,001 to 3,738,503
_03552
ECD_03553: ECD_03553 - response regulator in two-component regulatory system wtih UhpB, at 3,738,503 to 3,739,093
_03553
ECD_03554: ECD_03554 - acetolactate synthase 1 small subunit, at 3,739,168 to 3,739,458
_03554
ECD_03555: ECD_03555 - acetolactate synthase 2 large subunit, at 3,739,462 to 3,741,150
_03555
Position (kb)
3739
3740 Strain fitness (log2 ratio)
-1
0
1 at 3738.236 kb on + strand, within ECD_03552 at 3738.289 kb on + strand, within ECD_03552 at 3738.290 kb on - strand, within ECD_03552 at 3738.423 kb on - strand at 3738.456 kb on - strand at 3738.456 kb on - strand at 3738.480 kb on + strand at 3738.480 kb on + strand at 3738.480 kb on + strand at 3738.481 kb on - strand at 3738.481 kb on - strand at 3738.481 kb on - strand at 3738.481 kb on - strand at 3738.709 kb on + strand, within ECD_03553 at 3738.733 kb on - strand, within ECD_03553 at 3738.784 kb on + strand, within ECD_03553 at 3738.785 kb on - strand, within ECD_03553 at 3738.865 kb on + strand, within ECD_03553 at 3738.865 kb on + strand, within ECD_03553 at 3738.878 kb on - strand, within ECD_03553 at 3738.897 kb on - strand, within ECD_03553 at 3738.916 kb on + strand, within ECD_03553 at 3738.940 kb on + strand, within ECD_03553 at 3738.941 kb on - strand, within ECD_03553 at 3738.941 kb on - strand, within ECD_03553 at 3739.007 kb on + strand, within ECD_03553 at 3739.008 kb on - strand, within ECD_03553 at 3739.008 kb on - strand, within ECD_03553 at 3739.008 kb on - strand, within ECD_03553 at 3739.073 kb on + strand at 3739.073 kb on + strand at 3739.074 kb on - strand at 3739.074 kb on - strand at 3739.074 kb on - strand at 3739.128 kb on - strand at 3739.194 kb on + strand at 3739.194 kb on + strand at 3739.219 kb on - strand, within ECD_03554 at 3739.219 kb on - strand, within ECD_03554 at 3739.261 kb on + strand, within ECD_03554 at 3739.262 kb on - strand, within ECD_03554 at 3739.262 kb on - strand, within ECD_03554 at 3739.262 kb on - strand, within ECD_03554 at 3739.305 kb on + strand, within ECD_03554 at 3739.306 kb on - strand, within ECD_03554 at 3739.396 kb on + strand, within ECD_03554 at 3739.432 kb on + strand at 3739.433 kb on - strand at 3739.463 kb on + strand at 3739.800 kb on + strand, within ECD_03555 at 3739.800 kb on + strand, within ECD_03555 at 3739.801 kb on - strand, within ECD_03555 at 3739.992 kb on + strand, within ECD_03555 at 3739.993 kb on - strand, within ECD_03555 at 3739.993 kb on - strand, within ECD_03555 at 3740.208 kb on + strand, within ECD_03555 at 3740.312 kb on - strand, within ECD_03555 at 3740.337 kb on + strand, within ECD_03555 at 3740.338 kb on - strand, within ECD_03555 at 3740.340 kb on - strand, within ECD_03555 at 3740.374 kb on - strand, within ECD_03555
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 3,738,236 + ECD_03552 0.82 -1.2 3,738,289 + ECD_03552 0.86 -0.2 3,738,290 - ECD_03552 0.86 +0.6 3,738,423 - -0.6 3,738,456 - -1.6 3,738,456 - +0.1 3,738,480 + +0.5 3,738,480 + -0.3 3,738,480 + -0.8 3,738,481 - +1.0 3,738,481 - -0.2 3,738,481 - -0.1 3,738,481 - +0.8 3,738,709 + ECD_03553 0.35 +0.2 3,738,733 - ECD_03553 0.39 +0.6 3,738,784 + ECD_03553 0.48 +0.2 3,738,785 - ECD_03553 0.48 +0.7 3,738,865 + ECD_03553 0.61 +0.3 3,738,865 + ECD_03553 0.61 -0.0 3,738,878 - ECD_03553 0.63 +0.3 3,738,897 - ECD_03553 0.67 +0.9 3,738,916 + ECD_03553 0.70 +0.4 3,738,940 + ECD_03553 0.74 -0.2 3,738,941 - ECD_03553 0.74 +0.7 3,738,941 - ECD_03553 0.74 -0.2 3,739,007 + ECD_03553 0.85 +0.9 3,739,008 - ECD_03553 0.85 +0.1 3,739,008 - ECD_03553 0.85 +0.0 3,739,008 - ECD_03553 0.85 +0.1 3,739,073 + +0.7 3,739,073 + +0.7 3,739,074 - -0.5 3,739,074 - +0.3 3,739,074 - +0.4 3,739,128 - -0.2 3,739,194 + -0.7 3,739,194 + +0.0 3,739,219 - ECD_03554 0.18 +0.5 3,739,219 - ECD_03554 0.18 +0.2 3,739,261 + ECD_03554 0.32 +0.7 3,739,262 - ECD_03554 0.32 +0.2 3,739,262 - ECD_03554 0.32 +1.4 3,739,262 - ECD_03554 0.32 -0.0 3,739,305 + ECD_03554 0.47 +0.1 3,739,306 - ECD_03554 0.47 +0.8 3,739,396 + ECD_03554 0.78 +0.6 3,739,432 + +0.4 3,739,433 - +0.1 3,739,463 + +0.7 3,739,800 + ECD_03555 0.20 -0.6 3,739,800 + ECD_03555 0.20 +0.1 3,739,801 - ECD_03555 0.20 -1.0 3,739,992 + ECD_03555 0.31 +0.0 3,739,993 - ECD_03555 0.31 +0.5 3,739,993 - ECD_03555 0.31 +0.1 3,740,208 + ECD_03555 0.44 +0.7 3,740,312 - ECD_03555 0.50 -0.0 3,740,337 + ECD_03555 0.52 +0.1 3,740,338 - ECD_03555 0.52 -0.1 3,740,340 - ECD_03555 0.52 +0.8 3,740,374 - ECD_03555 0.54 -0.0
Or see this region's nucleotide sequence