Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03523 and ECD_03524 overlap by 154 nucleotides ECD_03524 and ECD_03525 are separated by 116 nucleotides ECD_03525 and ECD_03526 are separated by 84 nucleotides ECD_03526 and ECD_03527 are separated by 127 nucleotides ECD_03527 and ECD_03530 are separated by 566 nucleotides
ECD_03523: ECD_03523 - TrbC-like protein, at 3,713,345 to 3,714,508
_03523
ECD_03524: ECD_03524 - transposase, at 3,714,355 to 3,714,702
_03524
ECD_03525: ECD_03525 - hypothetical protein, at 3,714,819 to 3,715,157
_03525
ECD_03526: ECD_03526 - hypothetical protein, at 3,715,242 to 3,715,397
_03526
ECD_03527: ECD_03527 - hypothetical protein, at 3,715,525 to 3,715,827
_03527
ECD_03530: ECD_03530 - hypothetical protein, at 3,716,394 to 3,716,648
_03530
Position (kb)
3715
3716 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3714.406 kb on + strand at 3714.407 kb on - strand at 3714.409 kb on + strand at 3714.414 kb on + strand at 3714.415 kb on - strand at 3714.415 kb on - strand at 3714.415 kb on - strand at 3714.415 kb on - strand at 3714.415 kb on - strand at 3714.480 kb on + strand at 3714.480 kb on + strand at 3714.480 kb on + strand at 3714.480 kb on + strand at 3714.481 kb on - strand at 3714.481 kb on - strand at 3714.481 kb on - strand at 3714.481 kb on - strand at 3714.598 kb on - strand, within ECD_03524 at 3714.607 kb on + strand, within ECD_03524 at 3714.607 kb on + strand, within ECD_03524 at 3714.608 kb on - strand, within ECD_03524 at 3714.608 kb on - strand, within ECD_03524 at 3714.608 kb on - strand, within ECD_03524 at 3714.646 kb on - strand, within ECD_03524 at 3714.667 kb on + strand, within ECD_03524 at 3714.735 kb on + strand at 3714.740 kb on + strand at 3714.800 kb on + strand at 3714.846 kb on + strand at 3714.846 kb on + strand at 3714.891 kb on - strand, within ECD_03525 at 3714.897 kb on - strand, within ECD_03525 at 3714.963 kb on + strand, within ECD_03525 at 3714.965 kb on + strand, within ECD_03525 at 3714.974 kb on + strand, within ECD_03525 at 3714.994 kb on + strand, within ECD_03525 at 3714.994 kb on + strand, within ECD_03525 at 3715.045 kb on + strand, within ECD_03525 at 3715.057 kb on + strand, within ECD_03525 at 3715.057 kb on + strand, within ECD_03525 at 3715.057 kb on + strand, within ECD_03525 at 3715.058 kb on - strand, within ECD_03525 at 3715.058 kb on - strand, within ECD_03525 at 3715.060 kb on + strand, within ECD_03525 at 3715.060 kb on + strand, within ECD_03525 at 3715.060 kb on + strand, within ECD_03525 at 3715.061 kb on - strand, within ECD_03525 at 3715.061 kb on - strand, within ECD_03525 at 3715.153 kb on + strand at 3715.153 kb on + strand at 3715.153 kb on + strand at 3715.154 kb on - strand at 3715.154 kb on - strand at 3715.257 kb on - strand at 3715.260 kb on - strand, within ECD_03526 at 3715.260 kb on - strand, within ECD_03526 at 3715.357 kb on + strand, within ECD_03526 at 3715.358 kb on - strand, within ECD_03526 at 3715.358 kb on - strand, within ECD_03526 at 3715.380 kb on - strand, within ECD_03526 at 3715.380 kb on - strand, within ECD_03526 at 3715.419 kb on + strand at 3715.420 kb on - strand at 3715.420 kb on - strand at 3715.420 kb on - strand at 3715.421 kb on + strand at 3715.421 kb on + strand at 3715.422 kb on - strand at 3715.423 kb on + strand at 3715.424 kb on - strand at 3715.424 kb on - strand at 3715.429 kb on + strand at 3715.429 kb on + strand at 3715.430 kb on - strand at 3715.430 kb on - strand at 3715.430 kb on - strand at 3715.437 kb on - strand at 3715.437 kb on - strand at 3715.439 kb on + strand at 3715.440 kb on - strand at 3715.440 kb on - strand at 3715.444 kb on - strand at 3715.444 kb on - strand at 3715.445 kb on + strand at 3715.445 kb on + strand at 3715.446 kb on - strand at 3715.446 kb on - strand at 3715.458 kb on + strand at 3715.458 kb on + strand at 3715.459 kb on - strand at 3715.459 kb on - strand at 3715.459 kb on - strand at 3715.459 kb on - strand at 3715.470 kb on + strand at 3715.475 kb on + strand at 3715.476 kb on - strand at 3715.476 kb on - strand at 3715.478 kb on + strand at 3715.478 kb on + strand at 3715.478 kb on + strand at 3715.479 kb on - strand at 3715.479 kb on - strand at 3715.479 kb on - strand at 3715.479 kb on - strand at 3715.479 kb on - strand at 3715.479 kb on - strand at 3715.479 kb on - strand at 3715.498 kb on - strand at 3715.498 kb on - strand at 3715.498 kb on - strand at 3715.508 kb on + strand at 3715.508 kb on + strand at 3715.508 kb on + strand at 3715.551 kb on + strand at 3715.551 kb on + strand at 3715.555 kb on + strand at 3715.556 kb on - strand, within ECD_03527 at 3715.560 kb on + strand, within ECD_03527 at 3715.560 kb on + strand, within ECD_03527 at 3715.641 kb on + strand, within ECD_03527 at 3715.647 kb on + strand, within ECD_03527 at 3715.648 kb on - strand, within ECD_03527 at 3715.648 kb on - strand, within ECD_03527 at 3715.648 kb on - strand, within ECD_03527 at 3715.648 kb on - strand, within ECD_03527 at 3715.648 kb on - strand, within ECD_03527 at 3715.714 kb on + strand, within ECD_03527 at 3715.715 kb on - strand, within ECD_03527 at 3715.718 kb on + strand, within ECD_03527 at 3715.719 kb on - strand, within ECD_03527 at 3715.719 kb on - strand, within ECD_03527 at 3715.749 kb on + strand, within ECD_03527 at 3715.750 kb on - strand, within ECD_03527 at 3715.785 kb on - strand, within ECD_03527 at 3715.791 kb on - strand, within ECD_03527 at 3715.804 kb on - strand at 3715.816 kb on - strand at 3715.826 kb on - strand at 3715.831 kb on + strand at 3715.832 kb on - strand at 3715.832 kb on - strand at 3715.832 kb on - strand at 3715.832 kb on - strand at 3715.907 kb on - strand at 3715.942 kb on + strand at 3715.948 kb on + strand at 3716.017 kb on + strand at 3716.018 kb on - strand at 3716.049 kb on - strand at 3716.119 kb on + strand at 3716.120 kb on - strand at 3716.125 kb on + strand at 3716.125 kb on + strand at 3716.206 kb on - strand at 3716.249 kb on - strand at 3716.276 kb on + strand at 3716.277 kb on - strand at 3716.338 kb on - strand at 3716.391 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 3,714,406 + -0.2 3,714,407 - -0.3 3,714,409 + -0.1 3,714,414 + -0.7 3,714,415 - +0.4 3,714,415 - +0.2 3,714,415 - -0.2 3,714,415 - +0.2 3,714,415 - -1.1 3,714,480 + -0.0 3,714,480 + -0.1 3,714,480 + -0.1 3,714,480 + -0.1 3,714,481 - +2.1 3,714,481 - -0.9 3,714,481 - +0.1 3,714,481 - +0.2 3,714,598 - ECD_03524 0.70 -0.4 3,714,607 + ECD_03524 0.72 +0.2 3,714,607 + ECD_03524 0.72 -0.6 3,714,608 - ECD_03524 0.73 -2.1 3,714,608 - ECD_03524 0.73 -0.3 3,714,608 - ECD_03524 0.73 +0.1 3,714,646 - ECD_03524 0.84 -0.4 3,714,667 + ECD_03524 0.90 -0.2 3,714,735 + -0.5 3,714,740 + +1.1 3,714,800 + -0.9 3,714,846 + -0.1 3,714,846 + -0.5 3,714,891 - ECD_03525 0.21 +0.8 3,714,897 - ECD_03525 0.23 -0.0 3,714,963 + ECD_03525 0.42 -0.9 3,714,965 + ECD_03525 0.43 +0.7 3,714,974 + ECD_03525 0.46 +0.2 3,714,994 + ECD_03525 0.52 +1.1 3,714,994 + ECD_03525 0.52 -0.2 3,715,045 + ECD_03525 0.67 -0.3 3,715,057 + ECD_03525 0.70 +0.4 3,715,057 + ECD_03525 0.70 -0.3 3,715,057 + ECD_03525 0.70 -1.0 3,715,058 - ECD_03525 0.71 -0.2 3,715,058 - ECD_03525 0.71 -0.5 3,715,060 + ECD_03525 0.71 +0.7 3,715,060 + ECD_03525 0.71 +0.6 3,715,060 + ECD_03525 0.71 -0.1 3,715,061 - ECD_03525 0.71 -0.2 3,715,061 - ECD_03525 0.71 +0.8 3,715,153 + +0.1 3,715,153 + -0.6 3,715,153 + +0.1 3,715,154 - -0.1 3,715,154 - -0.1 3,715,257 - -0.4 3,715,260 - ECD_03526 0.12 +0.1 3,715,260 - ECD_03526 0.12 +0.2 3,715,357 + ECD_03526 0.74 -0.3 3,715,358 - ECD_03526 0.74 +0.0 3,715,358 - ECD_03526 0.74 -1.0 3,715,380 - ECD_03526 0.88 +0.0 3,715,380 - ECD_03526 0.88 -0.3 3,715,419 + -0.0 3,715,420 - +0.5 3,715,420 - -0.5 3,715,420 - -0.2 3,715,421 + -0.1 3,715,421 + -0.5 3,715,422 - -0.4 3,715,423 + -0.6 3,715,424 - +0.1 3,715,424 - +0.3 3,715,429 + -0.8 3,715,429 + -0.5 3,715,430 - -1.3 3,715,430 - +0.3 3,715,430 - +0.0 3,715,437 - +0.2 3,715,437 - -0.1 3,715,439 + +0.0 3,715,440 - -1.4 3,715,440 - -0.2 3,715,444 - +0.4 3,715,444 - +0.0 3,715,445 + +0.4 3,715,445 + +0.5 3,715,446 - +0.3 3,715,446 - -0.7 3,715,458 + -0.1 3,715,458 + -0.7 3,715,459 - +0.2 3,715,459 - +0.8 3,715,459 - +0.5 3,715,459 - -0.3 3,715,470 + -0.1 3,715,475 + +0.7 3,715,476 - -0.3 3,715,476 - +0.1 3,715,478 + +0.2 3,715,478 + -0.5 3,715,478 + -0.5 3,715,479 - -0.3 3,715,479 - -0.1 3,715,479 - +0.4 3,715,479 - -0.5 3,715,479 - +0.5 3,715,479 - -0.0 3,715,479 - -0.5 3,715,498 - -0.5 3,715,498 - -0.1 3,715,498 - -0.1 3,715,508 + -0.2 3,715,508 + -0.2 3,715,508 + +0.5 3,715,551 + +0.1 3,715,551 + -0.9 3,715,555 + +1.0 3,715,556 - ECD_03527 0.10 +0.6 3,715,560 + ECD_03527 0.12 -0.1 3,715,560 + ECD_03527 0.12 -0.3 3,715,641 + ECD_03527 0.38 +1.0 3,715,647 + ECD_03527 0.40 -0.2 3,715,648 - ECD_03527 0.41 +0.1 3,715,648 - ECD_03527 0.41 -0.2 3,715,648 - ECD_03527 0.41 +0.4 3,715,648 - ECD_03527 0.41 -0.6 3,715,648 - ECD_03527 0.41 -0.7 3,715,714 + ECD_03527 0.62 +1.0 3,715,715 - ECD_03527 0.63 -0.2 3,715,718 + ECD_03527 0.64 -0.0 3,715,719 - ECD_03527 0.64 +0.6 3,715,719 - ECD_03527 0.64 -0.0 3,715,749 + ECD_03527 0.74 +0.5 3,715,750 - ECD_03527 0.74 -0.1 3,715,785 - ECD_03527 0.86 +0.8 3,715,791 - ECD_03527 0.88 -1.7 3,715,804 - -1.6 3,715,816 - +0.0 3,715,826 - -1.2 3,715,831 + -0.7 3,715,832 - +0.3 3,715,832 - -0.1 3,715,832 - -0.5 3,715,832 - -0.7 3,715,907 - -0.9 3,715,942 + +0.5 3,715,948 + -0.7 3,716,017 + +0.6 3,716,018 - +0.7 3,716,049 - +0.1 3,716,119 + -0.0 3,716,120 - +0.2 3,716,125 + -0.1 3,716,125 + -0.5 3,716,206 - -1.3 3,716,249 - -0.1 3,716,276 + +0.6 3,716,277 - -0.8 3,716,338 - +0.2 3,716,391 - +1.2
Or see this region's nucleotide sequence