Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03492 and ECD_03493 are separated by 97 nucleotides ECD_03493 and ECD_03494 are separated by 20 nucleotides ECD_03494 and ECD_03495 are separated by 216 nucleotides ECD_03495 and ECD_03496 are separated by 171 nucleotides
ECD_03492: ECD_03492 - formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase, at 3,677,133 to 3,677,942
_03492
ECD_03493: ECD_03493 - 50S ribosomal subunit protein L33, at 3,678,040 to 3,678,207
_03493
ECD_03494: ECD_03494 - 50S ribosomal subunit protein L28, at 3,678,228 to 3,678,464
_03494
ECD_03495: ECD_03495 - UPF0758 family protein, at 3,678,681 to 3,679,349
_03495
ECD_03496: ECD_03496 - fused 4'-phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN-binding, at 3,679,521 to 3,680,741
_03496
Position (kb)
3678
3679
3680 Strain fitness (log2 ratio)
-1
0
1
2 at 3677.727 kb on + strand, within ECD_03492 at 3677.728 kb on - strand, within ECD_03492 at 3677.738 kb on + strand, within ECD_03492 at 3677.738 kb on + strand, within ECD_03492 at 3677.770 kb on + strand, within ECD_03492 at 3677.770 kb on + strand, within ECD_03492 at 3677.792 kb on + strand, within ECD_03492 at 3677.792 kb on + strand, within ECD_03492 at 3677.942 kb on + strand at 3677.942 kb on + strand at 3677.943 kb on - strand at 3677.943 kb on - strand at 3678.713 kb on - strand at 3678.774 kb on + strand, within ECD_03495 at 3678.775 kb on - strand, within ECD_03495 at 3678.836 kb on + strand, within ECD_03495 at 3678.836 kb on + strand, within ECD_03495 at 3678.837 kb on - strand, within ECD_03495 at 3678.837 kb on - strand, within ECD_03495 at 3678.945 kb on + strand, within ECD_03495 at 3678.948 kb on - strand, within ECD_03495 at 3678.981 kb on - strand, within ECD_03495 at 3679.048 kb on - strand, within ECD_03495 at 3679.078 kb on + strand, within ECD_03495 at 3679.078 kb on + strand, within ECD_03495 at 3679.078 kb on + strand, within ECD_03495 at 3679.079 kb on - strand, within ECD_03495 at 3679.079 kb on - strand, within ECD_03495 at 3679.079 kb on - strand, within ECD_03495 at 3679.079 kb on - strand, within ECD_03495 at 3679.079 kb on - strand, within ECD_03495 at 3679.079 kb on - strand, within ECD_03495 at 3679.079 kb on - strand, within ECD_03495 at 3679.082 kb on - strand, within ECD_03495 at 3679.110 kb on + strand, within ECD_03495 at 3679.111 kb on - strand, within ECD_03495 at 3679.162 kb on + strand, within ECD_03495 at 3679.162 kb on + strand, within ECD_03495 at 3679.224 kb on + strand, within ECD_03495 at 3679.225 kb on - strand, within ECD_03495 at 3679.227 kb on + strand, within ECD_03495 at 3679.227 kb on + strand, within ECD_03495 at 3679.227 kb on + strand, within ECD_03495 at 3679.227 kb on + strand, within ECD_03495 at 3679.228 kb on - strand, within ECD_03495 at 3679.228 kb on - strand, within ECD_03495 at 3679.228 kb on - strand, within ECD_03495 at 3679.228 kb on - strand, within ECD_03495 at 3679.471 kb on - strand at 3679.478 kb on + strand at 3679.505 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 3,677,727 + ECD_03492 0.73 +0.7 3,677,728 - ECD_03492 0.73 +0.7 3,677,738 + ECD_03492 0.75 +0.2 3,677,738 + ECD_03492 0.75 +0.5 3,677,770 + ECD_03492 0.79 +0.2 3,677,770 + ECD_03492 0.79 +0.5 3,677,792 + ECD_03492 0.81 +0.6 3,677,792 + ECD_03492 0.81 -0.2 3,677,942 + -0.0 3,677,942 + +0.0 3,677,943 - +1.1 3,677,943 - -0.2 3,678,713 - +0.0 3,678,774 + ECD_03495 0.14 +0.1 3,678,775 - ECD_03495 0.14 -1.4 3,678,836 + ECD_03495 0.23 +0.1 3,678,836 + ECD_03495 0.23 +0.2 3,678,837 - ECD_03495 0.23 -0.5 3,678,837 - ECD_03495 0.23 -0.3 3,678,945 + ECD_03495 0.39 +0.1 3,678,948 - ECD_03495 0.40 +0.7 3,678,981 - ECD_03495 0.45 +0.7 3,679,048 - ECD_03495 0.55 +1.4 3,679,078 + ECD_03495 0.59 +0.7 3,679,078 + ECD_03495 0.59 +0.1 3,679,078 + ECD_03495 0.59 +0.6 3,679,079 - ECD_03495 0.59 -1.2 3,679,079 - ECD_03495 0.59 -1.0 3,679,079 - ECD_03495 0.59 -0.7 3,679,079 - ECD_03495 0.59 +0.6 3,679,079 - ECD_03495 0.59 -0.3 3,679,079 - ECD_03495 0.59 -0.1 3,679,079 - ECD_03495 0.59 +0.1 3,679,082 - ECD_03495 0.60 +0.8 3,679,110 + ECD_03495 0.64 +0.1 3,679,111 - ECD_03495 0.64 +0.3 3,679,162 + ECD_03495 0.72 -0.2 3,679,162 + ECD_03495 0.72 +0.2 3,679,224 + ECD_03495 0.81 -1.0 3,679,225 - ECD_03495 0.81 -0.2 3,679,227 + ECD_03495 0.82 +0.1 3,679,227 + ECD_03495 0.82 +2.1 3,679,227 + ECD_03495 0.82 +1.0 3,679,227 + ECD_03495 0.82 +0.2 3,679,228 - ECD_03495 0.82 +0.1 3,679,228 - ECD_03495 0.82 -0.0 3,679,228 - ECD_03495 0.82 -0.0 3,679,228 - ECD_03495 0.82 +0.2 3,679,471 - +0.4 3,679,478 + +0.0 3,679,505 + -0.6
Or see this region's nucleotide sequence