Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03431 and ECD_03432 are separated by 3 nucleotides ECD_03432 and ECD_03433 overlap by 4 nucleotides ECD_03433 and ECD_03434 overlap by 8 nucleotides
ECD_03431: ECD_03431 - 2,3-diketo-L-gulonate-binding periplasmic protein, at 3,608,246 to 3,609,232
_03431
ECD_03432: ECD_03432 - L-xylulose kinase, at 3,609,236 to 3,610,732
_03432
ECD_03433: ECD_03433 - 3-keto-L-gulonate 6-phosphate decarboxylase, at 3,610,729 to 3,611,391
_03433
ECD_03434: ECD_03434 - putative L-xylulose 5-phosphate 3-epimerase, at 3,611,384 to 3,612,244
_03434
Position (kb)
3609
3610
3611 Strain fitness (log2 ratio)
-1
0
1
2 at 3608.481 kb on + strand, within ECD_03431 at 3608.481 kb on + strand, within ECD_03431 at 3608.482 kb on - strand, within ECD_03431 at 3608.661 kb on + strand, within ECD_03431 at 3608.717 kb on - strand, within ECD_03431 at 3608.831 kb on + strand, within ECD_03431 at 3608.831 kb on + strand, within ECD_03431 at 3608.832 kb on - strand, within ECD_03431 at 3608.942 kb on + strand, within ECD_03431 at 3608.988 kb on + strand, within ECD_03431 at 3608.989 kb on - strand, within ECD_03431 at 3608.989 kb on - strand, within ECD_03431 at 3608.989 kb on - strand, within ECD_03431 at 3608.989 kb on - strand, within ECD_03431 at 3609.037 kb on + strand, within ECD_03431 at 3609.041 kb on + strand, within ECD_03431 at 3609.041 kb on + strand, within ECD_03431 at 3609.041 kb on + strand, within ECD_03431 at 3609.041 kb on + strand, within ECD_03431 at 3609.042 kb on - strand, within ECD_03431 at 3609.230 kb on + strand at 3609.259 kb on - strand at 3609.424 kb on + strand, within ECD_03432 at 3609.425 kb on - strand, within ECD_03432 at 3609.652 kb on - strand, within ECD_03432 at 3609.652 kb on - strand, within ECD_03432 at 3609.735 kb on + strand, within ECD_03432 at 3609.766 kb on + strand, within ECD_03432 at 3609.766 kb on + strand, within ECD_03432 at 3609.767 kb on - strand, within ECD_03432 at 3609.806 kb on + strand, within ECD_03432 at 3609.807 kb on - strand, within ECD_03432 at 3610.006 kb on + strand, within ECD_03432 at 3610.063 kb on - strand, within ECD_03432 at 3610.063 kb on - strand, within ECD_03432 at 3610.085 kb on + strand, within ECD_03432 at 3610.085 kb on + strand, within ECD_03432 at 3610.086 kb on - strand, within ECD_03432 at 3610.086 kb on - strand, within ECD_03432 at 3610.086 kb on - strand, within ECD_03432 at 3610.086 kb on - strand, within ECD_03432 at 3610.086 kb on - strand, within ECD_03432 at 3610.092 kb on - strand, within ECD_03432 at 3610.092 kb on - strand, within ECD_03432 at 3610.092 kb on - strand, within ECD_03432 at 3610.100 kb on + strand, within ECD_03432 at 3610.100 kb on + strand, within ECD_03432 at 3610.141 kb on + strand, within ECD_03432 at 3610.265 kb on + strand, within ECD_03432 at 3610.265 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.352 kb on + strand, within ECD_03432 at 3610.353 kb on - strand, within ECD_03432 at 3610.353 kb on - strand, within ECD_03432 at 3610.353 kb on - strand, within ECD_03432 at 3610.375 kb on + strand, within ECD_03432 at 3610.376 kb on - strand, within ECD_03432 at 3610.376 kb on - strand, within ECD_03432 at 3610.425 kb on + strand, within ECD_03432 at 3610.631 kb on - strand at 3610.631 kb on - strand at 3610.631 kb on - strand at 3610.631 kb on - strand at 3610.714 kb on + strand at 3610.728 kb on + strand at 3610.728 kb on + strand at 3610.728 kb on + strand at 3610.729 kb on - strand at 3610.729 kb on - strand at 3610.803 kb on - strand, within ECD_03433 at 3610.803 kb on - strand, within ECD_03433 at 3611.109 kb on + strand, within ECD_03433 at 3611.131 kb on + strand, within ECD_03433 at 3611.132 kb on - strand, within ECD_03433 at 3611.132 kb on - strand, within ECD_03433 at 3611.132 kb on - strand, within ECD_03433 at 3611.212 kb on - strand, within ECD_03433 at 3611.367 kb on + strand at 3611.368 kb on - strand at 3611.368 kb on - strand at 3611.408 kb on + strand at 3611.409 kb on - strand at 3611.709 kb on + strand, within ECD_03434
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 3,608,481 + ECD_03431 0.24 -0.1 3,608,481 + ECD_03431 0.24 +0.4 3,608,482 - ECD_03431 0.24 +0.2 3,608,661 + ECD_03431 0.42 +1.8 3,608,717 - ECD_03431 0.48 -0.2 3,608,831 + ECD_03431 0.59 +0.7 3,608,831 + ECD_03431 0.59 -0.0 3,608,832 - ECD_03431 0.59 +0.9 3,608,942 + ECD_03431 0.71 -0.3 3,608,988 + ECD_03431 0.75 -0.9 3,608,989 - ECD_03431 0.75 -0.0 3,608,989 - ECD_03431 0.75 +0.7 3,608,989 - ECD_03431 0.75 +0.5 3,608,989 - ECD_03431 0.75 +0.4 3,609,037 + ECD_03431 0.80 +0.7 3,609,041 + ECD_03431 0.81 +1.0 3,609,041 + ECD_03431 0.81 -0.1 3,609,041 + ECD_03431 0.81 -0.9 3,609,041 + ECD_03431 0.81 +0.1 3,609,042 - ECD_03431 0.81 -0.2 3,609,230 + +0.5 3,609,259 - +0.9 3,609,424 + ECD_03432 0.13 -0.3 3,609,425 - ECD_03432 0.13 -0.1 3,609,652 - ECD_03432 0.28 +0.7 3,609,652 - ECD_03432 0.28 +0.9 3,609,735 + ECD_03432 0.33 +0.0 3,609,766 + ECD_03432 0.35 -0.5 3,609,766 + ECD_03432 0.35 -1.3 3,609,767 - ECD_03432 0.35 +0.3 3,609,806 + ECD_03432 0.38 +0.7 3,609,807 - ECD_03432 0.38 +0.1 3,610,006 + ECD_03432 0.51 -0.0 3,610,063 - ECD_03432 0.55 -0.1 3,610,063 - ECD_03432 0.55 -0.3 3,610,085 + ECD_03432 0.57 +0.0 3,610,085 + ECD_03432 0.57 +0.8 3,610,086 - ECD_03432 0.57 -0.6 3,610,086 - ECD_03432 0.57 -0.4 3,610,086 - ECD_03432 0.57 +0.2 3,610,086 - ECD_03432 0.57 -0.4 3,610,086 - ECD_03432 0.57 +0.0 3,610,092 - ECD_03432 0.57 +0.2 3,610,092 - ECD_03432 0.57 -0.2 3,610,092 - ECD_03432 0.57 -0.4 3,610,100 + ECD_03432 0.58 +1.1 3,610,100 + ECD_03432 0.58 +0.3 3,610,141 + ECD_03432 0.60 -0.7 3,610,265 + ECD_03432 0.69 +0.1 3,610,265 + ECD_03432 0.69 -0.5 3,610,352 + ECD_03432 0.75 +0.2 3,610,352 + ECD_03432 0.75 +0.3 3,610,352 + ECD_03432 0.75 -0.2 3,610,352 + ECD_03432 0.75 -0.2 3,610,352 + ECD_03432 0.75 -0.6 3,610,352 + ECD_03432 0.75 +0.0 3,610,353 - ECD_03432 0.75 +0.6 3,610,353 - ECD_03432 0.75 +0.1 3,610,353 - ECD_03432 0.75 -0.9 3,610,375 + ECD_03432 0.76 -0.5 3,610,376 - ECD_03432 0.76 +0.3 3,610,376 - ECD_03432 0.76 -0.2 3,610,425 + ECD_03432 0.79 +0.1 3,610,631 - +0.7 3,610,631 - -1.2 3,610,631 - +0.2 3,610,631 - +0.4 3,610,714 + -0.5 3,610,728 + -0.2 3,610,728 + -0.0 3,610,728 + +0.0 3,610,729 - +0.1 3,610,729 - +0.1 3,610,803 - ECD_03433 0.11 +0.4 3,610,803 - ECD_03433 0.11 +1.8 3,611,109 + ECD_03433 0.57 -0.0 3,611,131 + ECD_03433 0.61 -0.2 3,611,132 - ECD_03433 0.61 +0.5 3,611,132 - ECD_03433 0.61 +0.6 3,611,132 - ECD_03433 0.61 +0.8 3,611,212 - ECD_03433 0.73 +0.4 3,611,367 + +0.5 3,611,368 - +0.2 3,611,368 - -0.6 3,611,408 + -1.7 3,611,409 - +0.5 3,611,709 + ECD_03434 0.38 +1.5
Or see this region's nucleotide sequence