Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03422 and ECD_03423 are separated by 319 nucleotides ECD_03423 and ECD_03424 are separated by 177 nucleotides
ECD_03422: ECD_03422 - putative glucosaminidase, at 3,598,505 to 3,599,329
_03422
ECD_03423: ECD_03423 - alpha-amylase, at 3,599,649 to 3,601,679
_03423
ECD_03424: ECD_03424 - valine-pyruvate aminotransferase; transaminase C; alanine-valine transaminase, at 3,601,857 to 3,603,110
_03424
Position (kb)
3599
3600
3601
3602 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3598.688 kb on - strand, within ECD_03422 at 3598.688 kb on - strand, within ECD_03422 at 3598.704 kb on + strand, within ECD_03422 at 3598.705 kb on - strand, within ECD_03422 at 3598.705 kb on - strand, within ECD_03422 at 3598.732 kb on + strand, within ECD_03422 at 3598.732 kb on + strand, within ECD_03422 at 3598.756 kb on + strand, within ECD_03422 at 3598.771 kb on + strand, within ECD_03422 at 3598.772 kb on - strand, within ECD_03422 at 3598.873 kb on + strand, within ECD_03422 at 3598.910 kb on - strand, within ECD_03422 at 3598.930 kb on + strand, within ECD_03422 at 3598.930 kb on + strand, within ECD_03422 at 3598.934 kb on - strand, within ECD_03422 at 3598.953 kb on + strand, within ECD_03422 at 3598.954 kb on - strand, within ECD_03422 at 3599.066 kb on - strand, within ECD_03422 at 3599.070 kb on + strand, within ECD_03422 at 3599.071 kb on - strand, within ECD_03422 at 3599.078 kb on + strand, within ECD_03422 at 3599.121 kb on + strand, within ECD_03422 at 3599.122 kb on - strand, within ECD_03422 at 3599.146 kb on + strand, within ECD_03422 at 3599.147 kb on - strand, within ECD_03422 at 3599.170 kb on - strand, within ECD_03422 at 3599.187 kb on - strand, within ECD_03422 at 3599.187 kb on - strand, within ECD_03422 at 3599.198 kb on - strand, within ECD_03422 at 3599.198 kb on - strand, within ECD_03422 at 3599.198 kb on - strand, within ECD_03422 at 3599.200 kb on + strand, within ECD_03422 at 3599.201 kb on - strand, within ECD_03422 at 3599.201 kb on - strand, within ECD_03422 at 3599.201 kb on - strand, within ECD_03422 at 3599.201 kb on - strand, within ECD_03422 at 3599.206 kb on + strand, within ECD_03422 at 3599.206 kb on + strand, within ECD_03422 at 3599.282 kb on + strand at 3599.283 kb on - strand at 3599.287 kb on + strand at 3599.287 kb on + strand at 3599.288 kb on - strand at 3599.288 kb on - strand at 3599.288 kb on - strand at 3599.367 kb on - strand at 3599.438 kb on + strand at 3599.456 kb on - strand at 3599.456 kb on - strand at 3599.456 kb on - strand at 3599.784 kb on - strand at 3599.874 kb on - strand, within ECD_03423 at 3599.918 kb on + strand, within ECD_03423 at 3599.919 kb on - strand, within ECD_03423 at 3599.919 kb on - strand, within ECD_03423 at 3599.919 kb on - strand, within ECD_03423 at 3600.084 kb on + strand, within ECD_03423 at 3600.084 kb on + strand, within ECD_03423 at 3600.124 kb on + strand, within ECD_03423 at 3600.125 kb on - strand, within ECD_03423 at 3600.125 kb on - strand, within ECD_03423 at 3600.130 kb on + strand, within ECD_03423 at 3600.130 kb on + strand, within ECD_03423 at 3600.130 kb on + strand, within ECD_03423 at 3600.131 kb on - strand, within ECD_03423 at 3600.157 kb on + strand, within ECD_03423 at 3600.264 kb on - strand, within ECD_03423 at 3600.287 kb on + strand, within ECD_03423 at 3600.288 kb on - strand, within ECD_03423 at 3600.357 kb on + strand, within ECD_03423 at 3600.358 kb on - strand, within ECD_03423 at 3600.358 kb on - strand, within ECD_03423 at 3600.386 kb on - strand, within ECD_03423 at 3600.456 kb on + strand, within ECD_03423 at 3600.456 kb on + strand, within ECD_03423 at 3600.457 kb on - strand, within ECD_03423 at 3600.457 kb on - strand, within ECD_03423 at 3600.457 kb on - strand, within ECD_03423 at 3600.474 kb on + strand, within ECD_03423 at 3600.526 kb on + strand, within ECD_03423 at 3600.542 kb on + strand, within ECD_03423 at 3600.566 kb on + strand, within ECD_03423 at 3600.601 kb on - strand, within ECD_03423 at 3600.643 kb on + strand, within ECD_03423 at 3600.645 kb on + strand, within ECD_03423 at 3600.646 kb on - strand, within ECD_03423 at 3600.646 kb on - strand, within ECD_03423 at 3600.646 kb on - strand, within ECD_03423 at 3600.725 kb on + strand, within ECD_03423 at 3600.726 kb on - strand, within ECD_03423 at 3600.726 kb on - strand, within ECD_03423 at 3600.726 kb on - strand, within ECD_03423 at 3600.738 kb on + strand, within ECD_03423 at 3600.739 kb on - strand, within ECD_03423 at 3600.739 kb on - strand, within ECD_03423 at 3600.739 kb on - strand, within ECD_03423 at 3600.744 kb on - strand, within ECD_03423 at 3600.744 kb on - strand, within ECD_03423 at 3600.770 kb on + strand, within ECD_03423 at 3600.771 kb on - strand, within ECD_03423 at 3600.884 kb on + strand, within ECD_03423 at 3600.951 kb on + strand, within ECD_03423 at 3600.953 kb on + strand, within ECD_03423 at 3600.953 kb on + strand, within ECD_03423 at 3600.954 kb on - strand, within ECD_03423 at 3600.966 kb on + strand, within ECD_03423 at 3600.967 kb on - strand, within ECD_03423 at 3600.971 kb on - strand, within ECD_03423 at 3600.982 kb on + strand, within ECD_03423 at 3600.983 kb on - strand, within ECD_03423 at 3601.002 kb on + strand, within ECD_03423 at 3601.191 kb on + strand, within ECD_03423 at 3601.192 kb on - strand, within ECD_03423 at 3601.228 kb on - strand, within ECD_03423 at 3601.385 kb on - strand, within ECD_03423 at 3601.385 kb on - strand, within ECD_03423 at 3601.385 kb on - strand, within ECD_03423 at 3601.387 kb on + strand, within ECD_03423 at 3601.388 kb on - strand, within ECD_03423 at 3601.390 kb on + strand, within ECD_03423 at 3601.390 kb on + strand, within ECD_03423 at 3601.391 kb on - strand, within ECD_03423 at 3601.391 kb on - strand, within ECD_03423 at 3601.394 kb on - strand, within ECD_03423 at 3601.420 kb on - strand, within ECD_03423 at 3601.451 kb on + strand, within ECD_03423 at 3601.452 kb on - strand, within ECD_03423 at 3601.475 kb on + strand, within ECD_03423 at 3601.475 kb on + strand, within ECD_03423 at 3601.678 kb on - strand at 3601.808 kb on + strand at 3601.814 kb on + strand at 3601.814 kb on + strand at 3601.815 kb on - strand at 3601.936 kb on + strand at 3602.015 kb on - strand, within ECD_03424 at 3602.060 kb on + strand, within ECD_03424 at 3602.060 kb on + strand, within ECD_03424 at 3602.060 kb on + strand, within ECD_03424 at 3602.061 kb on - strand, within ECD_03424 at 3602.064 kb on + strand, within ECD_03424 at 3602.064 kb on + strand, within ECD_03424 at 3602.064 kb on + strand, within ECD_03424 at 3602.065 kb on - strand, within ECD_03424 at 3602.092 kb on + strand, within ECD_03424 at 3602.162 kb on - strand, within ECD_03424 at 3602.194 kb on + strand, within ECD_03424 at 3602.194 kb on + strand, within ECD_03424 at 3602.265 kb on + strand, within ECD_03424 at 3602.265 kb on + strand, within ECD_03424 at 3602.266 kb on - strand, within ECD_03424 at 3602.325 kb on - strand, within ECD_03424 at 3602.356 kb on - strand, within ECD_03424 at 3602.517 kb on + strand, within ECD_03424 at 3602.517 kb on + strand, within ECD_03424 at 3602.518 kb on - strand, within ECD_03424 at 3602.564 kb on - strand, within ECD_03424 at 3602.612 kb on - strand, within ECD_03424 at 3602.633 kb on + strand, within ECD_03424
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 3,598,688 - ECD_03422 0.22 +1.0 3,598,688 - ECD_03422 0.22 +0.3 3,598,704 + ECD_03422 0.24 +0.6 3,598,705 - ECD_03422 0.24 +0.3 3,598,705 - ECD_03422 0.24 -0.1 3,598,732 + ECD_03422 0.28 +0.1 3,598,732 + ECD_03422 0.28 -0.1 3,598,756 + ECD_03422 0.30 -0.6 3,598,771 + ECD_03422 0.32 -1.1 3,598,772 - ECD_03422 0.32 +0.0 3,598,873 + ECD_03422 0.45 -0.4 3,598,910 - ECD_03422 0.49 -0.3 3,598,930 + ECD_03422 0.52 -0.3 3,598,930 + ECD_03422 0.52 -0.0 3,598,934 - ECD_03422 0.52 -0.7 3,598,953 + ECD_03422 0.54 +1.0 3,598,954 - ECD_03422 0.54 -0.5 3,599,066 - ECD_03422 0.68 -0.8 3,599,070 + ECD_03422 0.68 +1.1 3,599,071 - ECD_03422 0.69 -0.1 3,599,078 + ECD_03422 0.69 -1.3 3,599,121 + ECD_03422 0.75 +0.0 3,599,122 - ECD_03422 0.75 +0.5 3,599,146 + ECD_03422 0.78 +0.2 3,599,147 - ECD_03422 0.78 +0.2 3,599,170 - ECD_03422 0.81 -0.6 3,599,187 - ECD_03422 0.83 +1.5 3,599,187 - ECD_03422 0.83 -0.6 3,599,198 - ECD_03422 0.84 +1.3 3,599,198 - ECD_03422 0.84 -0.3 3,599,198 - ECD_03422 0.84 +0.1 3,599,200 + ECD_03422 0.84 +0.4 3,599,201 - ECD_03422 0.84 +0.8 3,599,201 - ECD_03422 0.84 +0.1 3,599,201 - ECD_03422 0.84 +0.2 3,599,201 - ECD_03422 0.84 +1.3 3,599,206 + ECD_03422 0.85 -0.0 3,599,206 + ECD_03422 0.85 +0.2 3,599,282 + +0.3 3,599,283 - -0.8 3,599,287 + +0.3 3,599,287 + -1.3 3,599,288 - +0.5 3,599,288 - -0.2 3,599,288 - +0.0 3,599,367 - -0.0 3,599,438 + -0.8 3,599,456 - -0.1 3,599,456 - +1.8 3,599,456 - +0.6 3,599,784 - +0.1 3,599,874 - ECD_03423 0.11 +0.1 3,599,918 + ECD_03423 0.13 -0.8 3,599,919 - ECD_03423 0.13 -0.0 3,599,919 - ECD_03423 0.13 -0.6 3,599,919 - ECD_03423 0.13 +0.0 3,600,084 + ECD_03423 0.21 -0.7 3,600,084 + ECD_03423 0.21 -0.1 3,600,124 + ECD_03423 0.23 +0.0 3,600,125 - ECD_03423 0.23 +0.2 3,600,125 - ECD_03423 0.23 +0.6 3,600,130 + ECD_03423 0.24 -0.4 3,600,130 + ECD_03423 0.24 +0.1 3,600,130 + ECD_03423 0.24 -0.6 3,600,131 - ECD_03423 0.24 +1.3 3,600,157 + ECD_03423 0.25 +0.5 3,600,264 - ECD_03423 0.30 +0.1 3,600,287 + ECD_03423 0.31 +0.2 3,600,288 - ECD_03423 0.31 +0.2 3,600,357 + ECD_03423 0.35 +0.6 3,600,358 - ECD_03423 0.35 -0.1 3,600,358 - ECD_03423 0.35 -1.0 3,600,386 - ECD_03423 0.36 +0.4 3,600,456 + ECD_03423 0.40 -0.3 3,600,456 + ECD_03423 0.40 +1.0 3,600,457 - ECD_03423 0.40 +0.2 3,600,457 - ECD_03423 0.40 +0.2 3,600,457 - ECD_03423 0.40 -0.0 3,600,474 + ECD_03423 0.41 +0.6 3,600,526 + ECD_03423 0.43 -0.9 3,600,542 + ECD_03423 0.44 -0.1 3,600,566 + ECD_03423 0.45 -0.5 3,600,601 - ECD_03423 0.47 -1.0 3,600,643 + ECD_03423 0.49 +0.0 3,600,645 + ECD_03423 0.49 +0.4 3,600,646 - ECD_03423 0.49 -0.0 3,600,646 - ECD_03423 0.49 -0.0 3,600,646 - ECD_03423 0.49 -0.2 3,600,725 + ECD_03423 0.53 +0.5 3,600,726 - ECD_03423 0.53 +0.5 3,600,726 - ECD_03423 0.53 +0.5 3,600,726 - ECD_03423 0.53 -0.6 3,600,738 + ECD_03423 0.54 +0.1 3,600,739 - ECD_03423 0.54 +0.1 3,600,739 - ECD_03423 0.54 -0.1 3,600,739 - ECD_03423 0.54 +0.0 3,600,744 - ECD_03423 0.54 +0.6 3,600,744 - ECD_03423 0.54 -0.1 3,600,770 + ECD_03423 0.55 -0.0 3,600,771 - ECD_03423 0.55 -0.1 3,600,884 + ECD_03423 0.61 +0.1 3,600,951 + ECD_03423 0.64 -0.1 3,600,953 + ECD_03423 0.64 +0.9 3,600,953 + ECD_03423 0.64 +0.7 3,600,954 - ECD_03423 0.64 -0.1 3,600,966 + ECD_03423 0.65 +0.5 3,600,967 - ECD_03423 0.65 +0.4 3,600,971 - ECD_03423 0.65 +1.1 3,600,982 + ECD_03423 0.66 -0.8 3,600,983 - ECD_03423 0.66 +0.0 3,601,002 + ECD_03423 0.67 +0.1 3,601,191 + ECD_03423 0.76 -1.1 3,601,192 - ECD_03423 0.76 -2.9 3,601,228 - ECD_03423 0.78 -1.6 3,601,385 - ECD_03423 0.85 +0.5 3,601,385 - ECD_03423 0.85 -0.2 3,601,385 - ECD_03423 0.85 +0.2 3,601,387 + ECD_03423 0.86 +1.2 3,601,388 - ECD_03423 0.86 +0.4 3,601,390 + ECD_03423 0.86 -0.8 3,601,390 + ECD_03423 0.86 -0.4 3,601,391 - ECD_03423 0.86 -0.3 3,601,391 - ECD_03423 0.86 -0.0 3,601,394 - ECD_03423 0.86 +0.8 3,601,420 - ECD_03423 0.87 -0.2 3,601,451 + ECD_03423 0.89 -0.6 3,601,452 - ECD_03423 0.89 -0.5 3,601,475 + ECD_03423 0.90 -0.3 3,601,475 + ECD_03423 0.90 -0.9 3,601,678 - +0.8 3,601,808 + +0.0 3,601,814 + -0.6 3,601,814 + -0.5 3,601,815 - -0.3 3,601,936 + -0.1 3,602,015 - ECD_03424 0.13 +0.4 3,602,060 + ECD_03424 0.16 +0.3 3,602,060 + ECD_03424 0.16 -0.8 3,602,060 + ECD_03424 0.16 +0.1 3,602,061 - ECD_03424 0.16 -0.6 3,602,064 + ECD_03424 0.17 +0.9 3,602,064 + ECD_03424 0.17 -0.6 3,602,064 + ECD_03424 0.17 -0.1 3,602,065 - ECD_03424 0.17 -0.4 3,602,092 + ECD_03424 0.19 -0.0 3,602,162 - ECD_03424 0.24 -0.4 3,602,194 + ECD_03424 0.27 +1.0 3,602,194 + ECD_03424 0.27 +0.3 3,602,265 + ECD_03424 0.33 -0.8 3,602,265 + ECD_03424 0.33 -0.3 3,602,266 - ECD_03424 0.33 -1.0 3,602,325 - ECD_03424 0.37 +0.6 3,602,356 - ECD_03424 0.40 -0.7 3,602,517 + ECD_03424 0.53 +0.1 3,602,517 + ECD_03424 0.53 +0.4 3,602,518 - ECD_03424 0.53 +0.4 3,602,564 - ECD_03424 0.56 +0.7 3,602,612 - ECD_03424 0.60 -0.5 3,602,633 + ECD_03424 0.62 +0.1
Or see this region's nucleotide sequence