Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03296 and ECD_03297 are separated by 119 nucleotides ECD_03297 and ECD_03298 overlap by 14 nucleotides ECD_03298 and ECD_03299 overlap by 4 nucleotides
ECD_03296: ECD_03296 - gamma-glutamyltranspeptidase, at 3,447,453 to 3,449,195
_03296
ECD_03297: ECD_03297 - DUF2756 family protein, at 3,449,315 to 3,449,755
_03297
ECD_03298: ECD_03298 - glycerophosphodiester phosphodiesterase, cytosolic, at 3,449,742 to 3,450,485
_03298
ECD_03299: ECD_03299 - sn-glycerol-3-phosphate ABC transporter ATPase, at 3,450,482 to 3,451,552
_03299
Position (kb)
3449
3450
3451 Strain fitness (log2 ratio)
-2
-1
0
1 at 3448.823 kb on + strand, within ECD_03296 at 3449.046 kb on + strand at 3449.047 kb on - strand at 3449.095 kb on + strand at 3449.095 kb on + strand at 3449.096 kb on - strand at 3449.230 kb on + strand at 3449.230 kb on + strand at 3449.230 kb on + strand at 3449.231 kb on - strand at 3449.239 kb on + strand at 3449.241 kb on + strand at 3449.241 kb on + strand at 3449.241 kb on + strand at 3449.241 kb on + strand at 3449.241 kb on + strand at 3449.242 kb on - strand at 3449.242 kb on - strand at 3449.243 kb on + strand at 3449.243 kb on + strand at 3449.244 kb on - strand at 3449.244 kb on - strand at 3449.244 kb on - strand at 3449.244 kb on - strand at 3449.254 kb on + strand at 3449.254 kb on + strand at 3449.310 kb on - strand at 3449.374 kb on + strand, within ECD_03297 at 3449.375 kb on - strand, within ECD_03297 at 3449.375 kb on - strand, within ECD_03297 at 3449.377 kb on + strand, within ECD_03297 at 3449.533 kb on - strand, within ECD_03297 at 3449.539 kb on + strand, within ECD_03297 at 3449.540 kb on - strand, within ECD_03297 at 3449.540 kb on - strand, within ECD_03297 at 3449.648 kb on - strand, within ECD_03297 at 3449.668 kb on + strand, within ECD_03297 at 3449.668 kb on + strand, within ECD_03297 at 3449.668 kb on + strand, within ECD_03297 at 3449.669 kb on - strand, within ECD_03297 at 3449.669 kb on - strand, within ECD_03297 at 3449.786 kb on + strand at 3449.846 kb on + strand, within ECD_03298 at 3449.849 kb on - strand, within ECD_03298 at 3449.849 kb on - strand, within ECD_03298 at 3449.909 kb on + strand, within ECD_03298 at 3449.909 kb on + strand, within ECD_03298 at 3449.909 kb on + strand, within ECD_03298 at 3449.909 kb on + strand, within ECD_03298 at 3449.910 kb on - strand, within ECD_03298 at 3449.910 kb on - strand, within ECD_03298 at 3449.910 kb on - strand, within ECD_03298 at 3449.924 kb on + strand, within ECD_03298 at 3449.924 kb on + strand, within ECD_03298 at 3450.069 kb on - strand, within ECD_03298 at 3450.258 kb on + strand, within ECD_03298 at 3450.380 kb on + strand, within ECD_03298 at 3450.381 kb on - strand, within ECD_03298 at 3450.479 kb on + strand at 3450.479 kb on + strand at 3450.479 kb on + strand at 3450.480 kb on - strand at 3450.480 kb on - strand at 3450.480 kb on - strand at 3450.480 kb on - strand at 3450.480 kb on - strand at 3450.701 kb on - strand, within ECD_03299 at 3450.701 kb on - strand, within ECD_03299 at 3450.741 kb on + strand, within ECD_03299 at 3450.750 kb on + strand, within ECD_03299 at 3450.808 kb on + strand, within ECD_03299 at 3450.885 kb on + strand, within ECD_03299 at 3450.886 kb on - strand, within ECD_03299 at 3450.939 kb on - strand, within ECD_03299 at 3450.980 kb on - strand, within ECD_03299 at 3451.282 kb on + strand, within ECD_03299
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 3,448,823 + ECD_03296 0.79 +0.4 3,449,046 + -0.8 3,449,047 - +0.9 3,449,095 + +1.1 3,449,095 + +0.4 3,449,096 - -0.3 3,449,230 + +0.1 3,449,230 + +0.1 3,449,230 + +0.4 3,449,231 - +0.6 3,449,239 + +0.5 3,449,241 + +0.0 3,449,241 + -0.5 3,449,241 + +0.5 3,449,241 + +0.0 3,449,241 + -0.6 3,449,242 - +0.3 3,449,242 - +0.2 3,449,243 + -0.4 3,449,243 + -0.1 3,449,244 - +0.2 3,449,244 - +0.3 3,449,244 - -0.6 3,449,244 - +0.6 3,449,254 + -0.6 3,449,254 + -1.1 3,449,310 - -0.0 3,449,374 + ECD_03297 0.13 -0.0 3,449,375 - ECD_03297 0.14 -1.2 3,449,375 - ECD_03297 0.14 -0.9 3,449,377 + ECD_03297 0.14 -0.7 3,449,533 - ECD_03297 0.49 +0.4 3,449,539 + ECD_03297 0.51 +0.7 3,449,540 - ECD_03297 0.51 -0.8 3,449,540 - ECD_03297 0.51 -1.1 3,449,648 - ECD_03297 0.76 +0.2 3,449,668 + ECD_03297 0.80 +0.8 3,449,668 + ECD_03297 0.80 -0.3 3,449,668 + ECD_03297 0.80 +0.7 3,449,669 - ECD_03297 0.80 -0.2 3,449,669 - ECD_03297 0.80 -0.4 3,449,786 + -0.3 3,449,846 + ECD_03298 0.14 +0.5 3,449,849 - ECD_03298 0.14 +0.2 3,449,849 - ECD_03298 0.14 +1.4 3,449,909 + ECD_03298 0.22 +0.8 3,449,909 + ECD_03298 0.22 -0.3 3,449,909 + ECD_03298 0.22 -0.1 3,449,909 + ECD_03298 0.22 +1.3 3,449,910 - ECD_03298 0.23 -2.5 3,449,910 - ECD_03298 0.23 +1.2 3,449,910 - ECD_03298 0.23 -0.2 3,449,924 + ECD_03298 0.24 -0.5 3,449,924 + ECD_03298 0.24 +0.9 3,450,069 - ECD_03298 0.44 -0.4 3,450,258 + ECD_03298 0.69 -0.4 3,450,380 + ECD_03298 0.86 -0.1 3,450,381 - ECD_03298 0.86 -0.6 3,450,479 + +0.3 3,450,479 + -0.5 3,450,479 + +1.0 3,450,480 - +0.4 3,450,480 - -0.7 3,450,480 - +0.2 3,450,480 - -0.4 3,450,480 - -0.3 3,450,701 - ECD_03299 0.20 -0.2 3,450,701 - ECD_03299 0.20 -0.4 3,450,741 + ECD_03299 0.24 -0.7 3,450,750 + ECD_03299 0.25 -0.2 3,450,808 + ECD_03299 0.30 +0.9 3,450,885 + ECD_03299 0.38 -1.0 3,450,886 - ECD_03299 0.38 +0.2 3,450,939 - ECD_03299 0.43 -0.0 3,450,980 - ECD_03299 0.46 +0.1 3,451,282 + ECD_03299 0.75 -0.7
Or see this region's nucleotide sequence