Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03243 and ECD_03244 overlap by 89 nucleotides ECD_03244 and ECD_03245 overlap by 11 nucleotides ECD_03245 and ECD_03246 overlap by 17 nucleotides ECD_03246 and ECD_03247 overlap by 1 nucleotides
ECD_03243: ECD_03243 - DNA catabolic putative fimbrial transporter, at 3,379,843 to 3,381,081
_03243
ECD_03244: ECD_03244 - DNA catabolic protein, at 3,380,993 to 3,381,397
_03244
ECD_03245: ECD_03245 - DNA catabolic protein, at 3,381,387 to 3,381,827
_03245
ECD_03246: ECD_03246 - DNA catabolic putative fimbrial assembly protein, at 3,381,811 to 3,382,350
_03246
ECD_03247: ECD_03247 - DNA catabolic putative pilus assembly protein, at 3,382,350 to 3,383,129
_03247
Position (kb)
3381
3382 Strain fitness (log2 ratio)
-1
0
1 at 3380.523 kb on + strand, within ECD_03243 at 3380.523 kb on + strand, within ECD_03243 at 3380.591 kb on - strand, within ECD_03243 at 3380.646 kb on + strand, within ECD_03243 at 3380.646 kb on + strand, within ECD_03243 at 3380.647 kb on - strand, within ECD_03243 at 3380.665 kb on + strand, within ECD_03243 at 3380.666 kb on - strand, within ECD_03243 at 3380.666 kb on - strand, within ECD_03243 at 3380.666 kb on - strand, within ECD_03243 at 3380.717 kb on - strand, within ECD_03243 at 3380.717 kb on - strand, within ECD_03243 at 3380.787 kb on + strand, within ECD_03243 at 3380.869 kb on + strand, within ECD_03243 at 3380.896 kb on + strand, within ECD_03243 at 3380.902 kb on + strand, within ECD_03243 at 3380.902 kb on + strand, within ECD_03243 at 3380.903 kb on - strand, within ECD_03243 at 3380.903 kb on - strand, within ECD_03243 at 3381.034 kb on + strand at 3381.058 kb on + strand at 3381.059 kb on - strand at 3381.059 kb on - strand at 3381.085 kb on + strand, within ECD_03244 at 3381.147 kb on - strand, within ECD_03244 at 3381.168 kb on - strand, within ECD_03244 at 3381.168 kb on - strand, within ECD_03244 at 3381.237 kb on - strand, within ECD_03244 at 3381.311 kb on + strand, within ECD_03244 at 3381.311 kb on + strand, within ECD_03244 at 3381.312 kb on - strand, within ECD_03244 at 3381.329 kb on - strand, within ECD_03244 at 3381.344 kb on - strand, within ECD_03244 at 3381.367 kb on + strand at 3381.367 kb on + strand at 3381.368 kb on - strand at 3381.414 kb on + strand at 3381.414 kb on + strand at 3381.583 kb on - strand, within ECD_03245 at 3381.653 kb on - strand, within ECD_03245 at 3381.696 kb on + strand, within ECD_03245 at 3381.729 kb on + strand, within ECD_03245 at 3381.743 kb on + strand, within ECD_03245 at 3381.747 kb on + strand, within ECD_03245 at 3381.747 kb on + strand, within ECD_03245 at 3381.844 kb on + strand at 3381.940 kb on + strand, within ECD_03246 at 3381.949 kb on + strand, within ECD_03246 at 3382.117 kb on + strand, within ECD_03246 at 3382.156 kb on + strand, within ECD_03246 at 3382.156 kb on + strand, within ECD_03246 at 3382.156 kb on + strand, within ECD_03246 at 3382.157 kb on - strand, within ECD_03246 at 3382.202 kb on - strand, within ECD_03246 at 3382.202 kb on - strand, within ECD_03246 at 3382.234 kb on + strand, within ECD_03246 at 3382.235 kb on - strand, within ECD_03246 at 3382.237 kb on + strand, within ECD_03246 at 3382.355 kb on - strand at 3382.467 kb on + strand, within ECD_03247 at 3382.467 kb on + strand, within ECD_03247 at 3382.618 kb on - strand, within ECD_03247 at 3382.697 kb on + strand, within ECD_03247 at 3382.698 kb on - strand, within ECD_03247 at 3382.739 kb on + strand, within ECD_03247 at 3382.740 kb on - strand, within ECD_03247 at 3382.741 kb on + strand, within ECD_03247 at 3382.741 kb on + strand, within ECD_03247 at 3382.742 kb on - strand, within ECD_03247 at 3382.742 kb on - strand, within ECD_03247 at 3382.769 kb on - strand, within ECD_03247
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 3,380,523 + ECD_03243 0.55 +0.7 3,380,523 + ECD_03243 0.55 +0.4 3,380,591 - ECD_03243 0.60 +0.6 3,380,646 + ECD_03243 0.65 +0.7 3,380,646 + ECD_03243 0.65 +0.6 3,380,647 - ECD_03243 0.65 +0.6 3,380,665 + ECD_03243 0.66 -0.2 3,380,666 - ECD_03243 0.66 -1.0 3,380,666 - ECD_03243 0.66 +0.6 3,380,666 - ECD_03243 0.66 +0.5 3,380,717 - ECD_03243 0.71 -0.2 3,380,717 - ECD_03243 0.71 -0.2 3,380,787 + ECD_03243 0.76 -1.2 3,380,869 + ECD_03243 0.83 -1.2 3,380,896 + ECD_03243 0.85 -0.0 3,380,902 + ECD_03243 0.85 -0.1 3,380,902 + ECD_03243 0.85 +0.4 3,380,903 - ECD_03243 0.86 -0.6 3,380,903 - ECD_03243 0.86 +0.1 3,381,034 + +1.1 3,381,058 + +0.9 3,381,059 - -0.1 3,381,059 - +0.8 3,381,085 + ECD_03244 0.23 +0.2 3,381,147 - ECD_03244 0.38 -1.0 3,381,168 - ECD_03244 0.43 +0.2 3,381,168 - ECD_03244 0.43 -0.2 3,381,237 - ECD_03244 0.60 -1.1 3,381,311 + ECD_03244 0.79 -0.4 3,381,311 + ECD_03244 0.79 +0.3 3,381,312 - ECD_03244 0.79 +1.0 3,381,329 - ECD_03244 0.83 +0.3 3,381,344 - ECD_03244 0.87 +0.2 3,381,367 + -0.5 3,381,367 + +0.4 3,381,368 - -1.0 3,381,414 + -0.4 3,381,414 + -0.4 3,381,583 - ECD_03245 0.44 +0.2 3,381,653 - ECD_03245 0.60 +0.2 3,381,696 + ECD_03245 0.70 +1.0 3,381,729 + ECD_03245 0.78 +0.0 3,381,743 + ECD_03245 0.81 +1.2 3,381,747 + ECD_03245 0.82 +0.3 3,381,747 + ECD_03245 0.82 +0.6 3,381,844 + +0.3 3,381,940 + ECD_03246 0.24 -0.9 3,381,949 + ECD_03246 0.26 -1.0 3,382,117 + ECD_03246 0.57 -0.3 3,382,156 + ECD_03246 0.64 -0.0 3,382,156 + ECD_03246 0.64 +0.7 3,382,156 + ECD_03246 0.64 +0.3 3,382,157 - ECD_03246 0.64 -0.2 3,382,202 - ECD_03246 0.72 -1.5 3,382,202 - ECD_03246 0.72 +0.1 3,382,234 + ECD_03246 0.78 +0.1 3,382,235 - ECD_03246 0.79 -0.0 3,382,237 + ECD_03246 0.79 -0.2 3,382,355 - +0.3 3,382,467 + ECD_03247 0.15 +1.5 3,382,467 + ECD_03247 0.15 +0.3 3,382,618 - ECD_03247 0.34 -0.1 3,382,697 + ECD_03247 0.44 -1.1 3,382,698 - ECD_03247 0.45 +0.1 3,382,739 + ECD_03247 0.50 +0.5 3,382,740 - ECD_03247 0.50 -0.7 3,382,741 + ECD_03247 0.50 +0.2 3,382,741 + ECD_03247 0.50 -0.1 3,382,742 - ECD_03247 0.50 -1.2 3,382,742 - ECD_03247 0.50 -0.3 3,382,769 - ECD_03247 0.54 -0.3
Or see this region's nucleotide sequence