Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03184 and ECD_03185 overlap by 4 nucleotides ECD_03185 and ECD_03186 overlap by 1 nucleotides ECD_03186 and ECD_03187 are separated by 28 nucleotides ECD_03187 and ECD_03188 are separated by 71 nucleotides ECD_03188 and ECD_03189 are separated by 168 nucleotides
ECD_03184: ECD_03184 - general secretory pathway component, cryptic, at 3,324,156 to 3,325,319
_03184
ECD_03185: ECD_03185 - general secretory pathway component, cryptic, at 3,325,316 to 3,325,777
_03185
ECD_03186: ECD_03186 - bifunctional prepilin leader peptidase/ methylase, at 3,325,777 to 3,326,454
_03186
ECD_03187: ECD_03187 - bacterioferritin, iron storage and detoxification protein, at 3,326,483 to 3,326,959
_03187
ECD_03188: ECD_03188 - bacterioferritin-associated ferredoxin, at 3,327,031 to 3,327,225
_03188
ECD_03189: ECD_03189 - periplasmic endochitinase, at 3,327,394 to 3,329,454
_03189
Position (kb)
3325
3326
3327 Strain fitness (log2 ratio)
-1
0
1 at 3324.795 kb on + strand, within ECD_03184 at 3324.823 kb on - strand, within ECD_03184 at 3324.898 kb on + strand, within ECD_03184 at 3324.898 kb on + strand, within ECD_03184 at 3324.899 kb on - strand, within ECD_03184 at 3324.959 kb on + strand, within ECD_03184 at 3324.959 kb on + strand, within ECD_03184 at 3324.965 kb on + strand, within ECD_03184 at 3324.966 kb on - strand, within ECD_03184 at 3324.966 kb on - strand, within ECD_03184 at 3325.015 kb on - strand, within ECD_03184 at 3325.053 kb on + strand, within ECD_03184 at 3325.080 kb on + strand, within ECD_03184 at 3325.105 kb on - strand, within ECD_03184 at 3325.111 kb on + strand, within ECD_03184 at 3325.111 kb on + strand, within ECD_03184 at 3325.147 kb on + strand, within ECD_03184 at 3325.161 kb on + strand, within ECD_03184 at 3325.162 kb on - strand, within ECD_03184 at 3325.162 kb on - strand, within ECD_03184 at 3325.203 kb on - strand at 3325.237 kb on + strand at 3325.238 kb on - strand at 3325.238 kb on - strand at 3325.291 kb on + strand at 3325.292 kb on - strand at 3325.303 kb on - strand at 3325.416 kb on + strand, within ECD_03185 at 3325.429 kb on + strand, within ECD_03185 at 3325.429 kb on + strand, within ECD_03185 at 3325.429 kb on + strand, within ECD_03185 at 3325.429 kb on + strand, within ECD_03185 at 3325.433 kb on + strand, within ECD_03185 at 3325.433 kb on + strand, within ECD_03185 at 3325.434 kb on - strand, within ECD_03185 at 3325.434 kb on - strand, within ECD_03185 at 3325.552 kb on + strand, within ECD_03185 at 3325.553 kb on - strand, within ECD_03185 at 3325.616 kb on - strand, within ECD_03185 at 3325.688 kb on + strand, within ECD_03185 at 3325.689 kb on - strand, within ECD_03185 at 3325.689 kb on - strand, within ECD_03185 at 3325.689 kb on - strand, within ECD_03185 at 3325.689 kb on - strand, within ECD_03185 at 3325.776 kb on - strand at 3325.935 kb on + strand, within ECD_03186 at 3325.935 kb on + strand, within ECD_03186 at 3325.935 kb on + strand, within ECD_03186 at 3325.936 kb on - strand, within ECD_03186 at 3325.936 kb on - strand, within ECD_03186 at 3325.936 kb on - strand, within ECD_03186 at 3325.936 kb on - strand, within ECD_03186 at 3326.024 kb on - strand, within ECD_03186 at 3326.117 kb on + strand, within ECD_03186 at 3326.118 kb on - strand, within ECD_03186 at 3326.118 kb on - strand, within ECD_03186 at 3326.121 kb on + strand, within ECD_03186 at 3326.121 kb on + strand, within ECD_03186 at 3326.161 kb on + strand, within ECD_03186 at 3326.200 kb on + strand, within ECD_03186 at 3326.217 kb on - strand, within ECD_03186 at 3326.258 kb on + strand, within ECD_03186 at 3326.258 kb on + strand, within ECD_03186 at 3326.306 kb on + strand, within ECD_03186 at 3326.375 kb on + strand, within ECD_03186 at 3326.375 kb on + strand, within ECD_03186 at 3326.376 kb on - strand, within ECD_03186 at 3326.376 kb on - strand, within ECD_03186 at 3326.420 kb on + strand at 3326.421 kb on - strand at 3326.431 kb on + strand at 3326.450 kb on - strand at 3326.450 kb on - strand at 3326.597 kb on + strand, within ECD_03187 at 3326.598 kb on - strand, within ECD_03187 at 3326.748 kb on - strand, within ECD_03187 at 3326.785 kb on + strand, within ECD_03187 at 3326.785 kb on + strand, within ECD_03187 at 3326.785 kb on + strand, within ECD_03187 at 3326.786 kb on - strand, within ECD_03187 at 3326.827 kb on - strand, within ECD_03187 at 3326.827 kb on - strand, within ECD_03187 at 3326.944 kb on + strand at 3326.994 kb on - strand at 3326.994 kb on - strand at 3327.010 kb on - strand at 3327.010 kb on - strand at 3327.065 kb on - strand, within ECD_03188 at 3327.207 kb on + strand at 3327.208 kb on - strand at 3327.208 kb on - strand at 3327.221 kb on + strand at 3327.222 kb on - strand at 3327.222 kb on - strand at 3327.222 kb on - strand at 3327.222 kb on - strand at 3327.225 kb on + strand at 3327.226 kb on - strand at 3327.226 kb on - strand at 3327.395 kb on + strand at 3327.396 kb on - strand at 3327.403 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 3,324,795 + ECD_03184 0.55 +0.3 3,324,823 - ECD_03184 0.57 +1.0 3,324,898 + ECD_03184 0.64 +0.3 3,324,898 + ECD_03184 0.64 -0.8 3,324,899 - ECD_03184 0.64 -1.7 3,324,959 + ECD_03184 0.69 -0.2 3,324,959 + ECD_03184 0.69 +0.2 3,324,965 + ECD_03184 0.70 -0.2 3,324,966 - ECD_03184 0.70 -0.9 3,324,966 - ECD_03184 0.70 +0.2 3,325,015 - ECD_03184 0.74 +0.0 3,325,053 + ECD_03184 0.77 -0.1 3,325,080 + ECD_03184 0.79 +0.2 3,325,105 - ECD_03184 0.82 -0.7 3,325,111 + ECD_03184 0.82 -0.3 3,325,111 + ECD_03184 0.82 +0.0 3,325,147 + ECD_03184 0.85 -0.3 3,325,161 + ECD_03184 0.86 -0.1 3,325,162 - ECD_03184 0.86 +0.3 3,325,162 - ECD_03184 0.86 -0.4 3,325,203 - -0.5 3,325,237 + -0.0 3,325,238 - -0.3 3,325,238 - +0.1 3,325,291 + +0.3 3,325,292 - +0.1 3,325,303 - +0.9 3,325,416 + ECD_03185 0.22 -0.0 3,325,429 + ECD_03185 0.24 +0.0 3,325,429 + ECD_03185 0.24 -0.3 3,325,429 + ECD_03185 0.24 +0.3 3,325,429 + ECD_03185 0.24 -0.3 3,325,433 + ECD_03185 0.25 +0.3 3,325,433 + ECD_03185 0.25 +0.1 3,325,434 - ECD_03185 0.26 +0.2 3,325,434 - ECD_03185 0.26 +0.7 3,325,552 + ECD_03185 0.51 -0.3 3,325,553 - ECD_03185 0.51 +1.0 3,325,616 - ECD_03185 0.65 -0.9 3,325,688 + ECD_03185 0.81 -0.3 3,325,689 - ECD_03185 0.81 +0.2 3,325,689 - ECD_03185 0.81 -0.1 3,325,689 - ECD_03185 0.81 +0.4 3,325,689 - ECD_03185 0.81 -0.2 3,325,776 - -0.4 3,325,935 + ECD_03186 0.23 +1.0 3,325,935 + ECD_03186 0.23 -0.7 3,325,935 + ECD_03186 0.23 +1.3 3,325,936 - ECD_03186 0.23 +0.5 3,325,936 - ECD_03186 0.23 +0.5 3,325,936 - ECD_03186 0.23 +0.1 3,325,936 - ECD_03186 0.23 +0.4 3,326,024 - ECD_03186 0.36 -0.0 3,326,117 + ECD_03186 0.50 +0.6 3,326,118 - ECD_03186 0.50 +0.1 3,326,118 - ECD_03186 0.50 +0.1 3,326,121 + ECD_03186 0.51 -0.9 3,326,121 + ECD_03186 0.51 +0.0 3,326,161 + ECD_03186 0.57 -0.1 3,326,200 + ECD_03186 0.62 +0.2 3,326,217 - ECD_03186 0.65 +1.2 3,326,258 + ECD_03186 0.71 +1.0 3,326,258 + ECD_03186 0.71 -1.1 3,326,306 + ECD_03186 0.78 +0.4 3,326,375 + ECD_03186 0.88 +0.6 3,326,375 + ECD_03186 0.88 -0.2 3,326,376 - ECD_03186 0.88 -0.1 3,326,376 - ECD_03186 0.88 +0.1 3,326,420 + +0.4 3,326,421 - -0.0 3,326,431 + -0.3 3,326,450 - -0.9 3,326,450 - -0.3 3,326,597 + ECD_03187 0.24 -0.0 3,326,598 - ECD_03187 0.24 -1.5 3,326,748 - ECD_03187 0.56 +0.6 3,326,785 + ECD_03187 0.63 +0.2 3,326,785 + ECD_03187 0.63 -0.6 3,326,785 + ECD_03187 0.63 +0.2 3,326,786 - ECD_03187 0.64 +1.4 3,326,827 - ECD_03187 0.72 +1.0 3,326,827 - ECD_03187 0.72 -0.4 3,326,944 + +0.1 3,326,994 - -0.3 3,326,994 - -0.3 3,327,010 - -0.2 3,327,010 - -0.9 3,327,065 - ECD_03188 0.17 +0.2 3,327,207 + -0.0 3,327,208 - -0.1 3,327,208 - +0.6 3,327,221 + +0.5 3,327,222 - +0.1 3,327,222 - -1.6 3,327,222 - +0.6 3,327,222 - +1.0 3,327,225 + -0.7 3,327,226 - -0.1 3,327,226 - -0.4 3,327,395 + +0.3 3,327,396 - +0.7 3,327,403 - -0.4
Or see this region's nucleotide sequence