Strain Fitness in Escherichia coli BL21 around ECD_03121

Experiment: N4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03120 and ECD_03121 are separated by 83 nucleotidesECD_03121 and ECD_03122 are separated by 2 nucleotides ECD_03120: ECD_03120 - DNA adenine methyltransferase, SAM-dependent, at 3,272,809 to 3,273,693 _03120 ECD_03121: ECD_03121 - putative membrane protein, at 3,273,777 to 3,273,956 _03121 ECD_03122: ECD_03122 - acrAB operon transcriptional repressor, at 3,273,959 to 3,274,621 _03122 Position (kb) 3273 3274Strain fitness (log2 ratio) -1 0 1at 3272.895 kb on - strandat 3272.895 kb on - strandat 3272.899 kb on - strand, within ECD_03120at 3272.936 kb on - strand, within ECD_03120at 3273.055 kb on + strand, within ECD_03120at 3273.055 kb on + strand, within ECD_03120at 3273.061 kb on - strand, within ECD_03120at 3273.115 kb on - strand, within ECD_03120at 3273.143 kb on - strand, within ECD_03120at 3273.187 kb on + strand, within ECD_03120at 3273.187 kb on + strand, within ECD_03120at 3273.188 kb on - strand, within ECD_03120at 3273.188 kb on - strand, within ECD_03120at 3273.188 kb on - strand, within ECD_03120at 3273.226 kb on + strand, within ECD_03120at 3273.227 kb on - strand, within ECD_03120at 3273.316 kb on + strand, within ECD_03120at 3273.317 kb on - strand, within ECD_03120at 3273.317 kb on - strand, within ECD_03120at 3273.367 kb on + strand, within ECD_03120at 3273.371 kb on + strand, within ECD_03120at 3273.593 kb on - strand, within ECD_03120at 3273.734 kb on - strandat 3273.833 kb on + strand, within ECD_03121at 3274.327 kb on - strand, within ECD_03122at 3274.477 kb on - strand, within ECD_03122at 3274.536 kb on - strand, within ECD_03122at 3274.872 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N4
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3,272,895 - -0.1
3,272,895 - +0.5
3,272,899 - ECD_03120 0.10 +0.5
3,272,936 - ECD_03120 0.14 +0.9
3,273,055 + ECD_03120 0.28 -0.3
3,273,055 + ECD_03120 0.28 +0.0
3,273,061 - ECD_03120 0.28 +0.2
3,273,115 - ECD_03120 0.35 -0.5
3,273,143 - ECD_03120 0.38 +0.8
3,273,187 + ECD_03120 0.43 +0.3
3,273,187 + ECD_03120 0.43 +0.0
3,273,188 - ECD_03120 0.43 +1.4
3,273,188 - ECD_03120 0.43 +1.3
3,273,188 - ECD_03120 0.43 -0.1
3,273,226 + ECD_03120 0.47 +1.0
3,273,227 - ECD_03120 0.47 +1.3
3,273,316 + ECD_03120 0.57 +0.1
3,273,317 - ECD_03120 0.57 +1.3
3,273,317 - ECD_03120 0.57 +0.4
3,273,367 + ECD_03120 0.63 +0.4
3,273,371 + ECD_03120 0.64 -0.1
3,273,593 - ECD_03120 0.89 +0.3
3,273,734 - -0.1
3,273,833 + ECD_03121 0.31 -0.5
3,274,327 - ECD_03122 0.56 -0.4
3,274,477 - ECD_03122 0.78 +0.7
3,274,536 - ECD_03122 0.87 +0.5
3,274,872 + -1.1

Or see this region's nucleotide sequence