Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03110 and ECD_03111 are separated by 304 nucleotides ECD_03111 and ECD_03112 are separated by 151 nucleotides
ECD_03110: ECD_03110 - cell wall structural complex MreBCD, actin-like component MreB, at 3,261,200 to 3,262,243
_03110
ECD_03111: ECD_03111 - targeting factor for csrBC sRNA degradation, at 3,262,548 to 3,264,488
_03111
ECD_03112: ECD_03112 - putative acryloyl-CoA reductase, at 3,264,640 to 3,265,614
_03112
Position (kb)
3262
3263
3264
3265 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3262.371 kb on + strand at 3262.441 kb on - strand at 3262.458 kb on + strand at 3262.459 kb on - strand at 3262.459 kb on - strand at 3262.459 kb on - strand at 3262.459 kb on - strand at 3262.459 kb on - strand at 3262.459 kb on - strand at 3262.459 kb on - strand at 3262.522 kb on + strand at 3262.559 kb on - strand at 3262.584 kb on - strand at 3262.631 kb on + strand at 3262.632 kb on - strand at 3262.688 kb on - strand at 3262.805 kb on + strand, within ECD_03111 at 3262.826 kb on + strand, within ECD_03111 at 3262.826 kb on + strand, within ECD_03111 at 3262.827 kb on - strand, within ECD_03111 at 3262.827 kb on - strand, within ECD_03111 at 3262.827 kb on - strand, within ECD_03111 at 3262.830 kb on + strand, within ECD_03111 at 3262.830 kb on + strand, within ECD_03111 at 3262.830 kb on + strand, within ECD_03111 at 3262.831 kb on - strand, within ECD_03111 at 3262.831 kb on - strand, within ECD_03111 at 3262.893 kb on - strand, within ECD_03111 at 3262.902 kb on + strand, within ECD_03111 at 3262.903 kb on - strand, within ECD_03111 at 3262.913 kb on + strand, within ECD_03111 at 3262.913 kb on + strand, within ECD_03111 at 3262.913 kb on + strand, within ECD_03111 at 3262.914 kb on - strand, within ECD_03111 at 3262.914 kb on - strand, within ECD_03111 at 3262.914 kb on - strand, within ECD_03111 at 3262.914 kb on - strand, within ECD_03111 at 3262.924 kb on - strand, within ECD_03111 at 3262.988 kb on + strand, within ECD_03111 at 3263.076 kb on + strand, within ECD_03111 at 3263.077 kb on - strand, within ECD_03111 at 3263.110 kb on + strand, within ECD_03111 at 3263.110 kb on + strand, within ECD_03111 at 3263.110 kb on + strand, within ECD_03111 at 3263.149 kb on + strand, within ECD_03111 at 3263.149 kb on + strand, within ECD_03111 at 3263.149 kb on + strand, within ECD_03111 at 3263.149 kb on + strand, within ECD_03111 at 3263.149 kb on + strand, within ECD_03111 at 3263.150 kb on - strand, within ECD_03111 at 3263.174 kb on + strand, within ECD_03111 at 3263.175 kb on - strand, within ECD_03111 at 3263.335 kb on + strand, within ECD_03111 at 3263.335 kb on + strand, within ECD_03111 at 3263.335 kb on + strand, within ECD_03111 at 3263.336 kb on - strand, within ECD_03111 at 3263.336 kb on - strand, within ECD_03111 at 3263.348 kb on + strand, within ECD_03111 at 3263.348 kb on + strand, within ECD_03111 at 3263.373 kb on - strand, within ECD_03111 at 3263.454 kb on - strand, within ECD_03111 at 3263.475 kb on - strand, within ECD_03111 at 3263.505 kb on + strand, within ECD_03111 at 3263.505 kb on + strand, within ECD_03111 at 3263.506 kb on - strand, within ECD_03111 at 3263.535 kb on + strand, within ECD_03111 at 3263.612 kb on + strand, within ECD_03111 at 3263.612 kb on + strand, within ECD_03111 at 3263.612 kb on + strand, within ECD_03111 at 3263.613 kb on - strand, within ECD_03111 at 3263.613 kb on - strand, within ECD_03111 at 3263.687 kb on + strand, within ECD_03111 at 3263.687 kb on + strand, within ECD_03111 at 3263.688 kb on - strand, within ECD_03111 at 3263.733 kb on + strand, within ECD_03111 at 3263.733 kb on + strand, within ECD_03111 at 3263.734 kb on - strand, within ECD_03111 at 3263.790 kb on - strand, within ECD_03111 at 3263.822 kb on - strand, within ECD_03111 at 3263.838 kb on - strand, within ECD_03111 at 3263.838 kb on - strand, within ECD_03111 at 3263.923 kb on + strand, within ECD_03111 at 3263.923 kb on + strand, within ECD_03111 at 3263.923 kb on + strand, within ECD_03111 at 3263.923 kb on + strand, within ECD_03111 at 3263.923 kb on + strand, within ECD_03111 at 3263.923 kb on + strand, within ECD_03111 at 3263.923 kb on + strand, within ECD_03111 at 3263.923 kb on + strand, within ECD_03111 at 3263.924 kb on - strand, within ECD_03111 at 3263.924 kb on - strand, within ECD_03111 at 3263.924 kb on - strand, within ECD_03111 at 3263.924 kb on - strand, within ECD_03111 at 3263.924 kb on - strand, within ECD_03111 at 3263.924 kb on - strand, within ECD_03111 at 3263.961 kb on + strand, within ECD_03111 at 3263.962 kb on - strand, within ECD_03111 at 3263.966 kb on + strand, within ECD_03111 at 3264.041 kb on + strand, within ECD_03111 at 3264.041 kb on + strand, within ECD_03111 at 3264.042 kb on - strand, within ECD_03111 at 3264.042 kb on - strand, within ECD_03111 at 3264.100 kb on + strand, within ECD_03111 at 3264.100 kb on + strand, within ECD_03111 at 3264.100 kb on + strand, within ECD_03111 at 3264.101 kb on - strand, within ECD_03111 at 3264.101 kb on - strand, within ECD_03111 at 3264.206 kb on - strand, within ECD_03111 at 3264.206 kb on - strand, within ECD_03111 at 3264.206 kb on - strand, within ECD_03111 at 3264.206 kb on - strand, within ECD_03111 at 3264.209 kb on + strand, within ECD_03111 at 3264.210 kb on - strand, within ECD_03111 at 3264.210 kb on - strand, within ECD_03111 at 3264.210 kb on - strand, within ECD_03111 at 3264.210 kb on - strand, within ECD_03111 at 3264.210 kb on - strand, within ECD_03111 at 3264.227 kb on + strand, within ECD_03111 at 3264.228 kb on - strand, within ECD_03111 at 3264.228 kb on - strand, within ECD_03111 at 3264.228 kb on - strand, within ECD_03111 at 3264.229 kb on + strand, within ECD_03111 at 3264.229 kb on + strand, within ECD_03111 at 3264.230 kb on - strand, within ECD_03111 at 3264.230 kb on - strand, within ECD_03111 at 3264.285 kb on + strand, within ECD_03111 at 3264.285 kb on + strand, within ECD_03111 at 3264.285 kb on + strand, within ECD_03111 at 3264.285 kb on + strand, within ECD_03111 at 3264.285 kb on + strand, within ECD_03111 at 3264.286 kb on - strand, within ECD_03111 at 3264.286 kb on - strand, within ECD_03111 at 3264.306 kb on + strand at 3264.306 kb on + strand at 3264.306 kb on + strand at 3264.306 kb on + strand at 3264.307 kb on - strand at 3264.307 kb on - strand at 3264.307 kb on - strand at 3264.307 kb on - strand at 3264.307 kb on - strand at 3264.307 kb on - strand at 3264.309 kb on + strand at 3264.310 kb on - strand at 3264.374 kb on + strand at 3264.375 kb on - strand at 3264.380 kb on + strand at 3264.380 kb on + strand at 3264.380 kb on + strand at 3264.380 kb on + strand at 3264.380 kb on + strand at 3264.381 kb on - strand at 3264.381 kb on - strand at 3264.382 kb on + strand at 3264.398 kb on - strand at 3264.398 kb on - strand at 3264.455 kb on + strand at 3264.455 kb on + strand at 3264.480 kb on + strand at 3264.498 kb on - strand at 3264.524 kb on - strand at 3264.526 kb on + strand at 3264.527 kb on - strand at 3264.541 kb on - strand at 3264.552 kb on + strand at 3264.591 kb on + strand at 3264.592 kb on - strand at 3264.606 kb on - strand at 3264.639 kb on + strand at 3264.640 kb on - strand at 3264.640 kb on - strand at 3264.640 kb on - strand at 3264.690 kb on - strand at 3264.760 kb on + strand, within ECD_03112 at 3264.760 kb on + strand, within ECD_03112 at 3264.761 kb on - strand, within ECD_03112 at 3264.763 kb on - strand, within ECD_03112 at 3265.026 kb on + strand, within ECD_03112 at 3265.143 kb on + strand, within ECD_03112 at 3265.144 kb on - strand, within ECD_03112 at 3265.144 kb on - strand, within ECD_03112 at 3265.144 kb on - strand, within ECD_03112 at 3265.144 kb on - strand, within ECD_03112 at 3265.186 kb on - strand, within ECD_03112 at 3265.186 kb on - strand, within ECD_03112 at 3265.378 kb on - strand, within ECD_03112 at 3265.413 kb on + strand, within ECD_03112 at 3265.413 kb on + strand, within ECD_03112 at 3265.414 kb on - strand, within ECD_03112
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 3,262,371 + +0.6 3,262,441 - -0.7 3,262,458 + +1.1 3,262,459 - -0.4 3,262,459 - -0.3 3,262,459 - +0.9 3,262,459 - +0.6 3,262,459 - -0.4 3,262,459 - +0.0 3,262,459 - -0.1 3,262,522 + +0.7 3,262,559 - -0.3 3,262,584 - +0.3 3,262,631 + -0.1 3,262,632 - +0.2 3,262,688 - +0.5 3,262,805 + ECD_03111 0.13 -0.3 3,262,826 + ECD_03111 0.14 -0.4 3,262,826 + ECD_03111 0.14 +0.6 3,262,827 - ECD_03111 0.14 +0.0 3,262,827 - ECD_03111 0.14 +0.3 3,262,827 - ECD_03111 0.14 +0.3 3,262,830 + ECD_03111 0.15 -1.7 3,262,830 + ECD_03111 0.15 +0.4 3,262,830 + ECD_03111 0.15 +1.6 3,262,831 - ECD_03111 0.15 +0.7 3,262,831 - ECD_03111 0.15 -0.3 3,262,893 - ECD_03111 0.18 +0.3 3,262,902 + ECD_03111 0.18 +0.0 3,262,903 - ECD_03111 0.18 +0.6 3,262,913 + ECD_03111 0.19 -0.1 3,262,913 + ECD_03111 0.19 -0.2 3,262,913 + ECD_03111 0.19 +0.2 3,262,914 - ECD_03111 0.19 +0.5 3,262,914 - ECD_03111 0.19 -0.0 3,262,914 - ECD_03111 0.19 -0.0 3,262,914 - ECD_03111 0.19 +1.1 3,262,924 - ECD_03111 0.19 -0.0 3,262,988 + ECD_03111 0.23 +0.1 3,263,076 + ECD_03111 0.27 -0.0 3,263,077 - ECD_03111 0.27 +0.4 3,263,110 + ECD_03111 0.29 -0.3 3,263,110 + ECD_03111 0.29 +0.5 3,263,110 + ECD_03111 0.29 +0.0 3,263,149 + ECD_03111 0.31 -0.1 3,263,149 + ECD_03111 0.31 +0.5 3,263,149 + ECD_03111 0.31 +0.2 3,263,149 + ECD_03111 0.31 +0.3 3,263,149 + ECD_03111 0.31 +1.2 3,263,150 - ECD_03111 0.31 +0.1 3,263,174 + ECD_03111 0.32 -0.3 3,263,175 - ECD_03111 0.32 -0.3 3,263,335 + ECD_03111 0.41 -0.3 3,263,335 + ECD_03111 0.41 +1.2 3,263,335 + ECD_03111 0.41 +0.6 3,263,336 - ECD_03111 0.41 +0.1 3,263,336 - ECD_03111 0.41 -1.0 3,263,348 + ECD_03111 0.41 -0.0 3,263,348 + ECD_03111 0.41 -0.3 3,263,373 - ECD_03111 0.43 -0.4 3,263,454 - ECD_03111 0.47 -0.0 3,263,475 - ECD_03111 0.48 +1.3 3,263,505 + ECD_03111 0.49 -0.1 3,263,505 + ECD_03111 0.49 -1.4 3,263,506 - ECD_03111 0.49 +0.5 3,263,535 + ECD_03111 0.51 +0.7 3,263,612 + ECD_03111 0.55 +0.3 3,263,612 + ECD_03111 0.55 -0.6 3,263,612 + ECD_03111 0.55 -0.0 3,263,613 - ECD_03111 0.55 +1.7 3,263,613 - ECD_03111 0.55 -0.1 3,263,687 + ECD_03111 0.59 +0.6 3,263,687 + ECD_03111 0.59 -2.4 3,263,688 - ECD_03111 0.59 -0.2 3,263,733 + ECD_03111 0.61 -0.2 3,263,733 + ECD_03111 0.61 -0.7 3,263,734 - ECD_03111 0.61 -1.5 3,263,790 - ECD_03111 0.64 +0.1 3,263,822 - ECD_03111 0.66 +0.6 3,263,838 - ECD_03111 0.66 -0.3 3,263,838 - ECD_03111 0.66 +0.1 3,263,923 + ECD_03111 0.71 -0.6 3,263,923 + ECD_03111 0.71 -0.1 3,263,923 + ECD_03111 0.71 +1.4 3,263,923 + ECD_03111 0.71 +1.0 3,263,923 + ECD_03111 0.71 +0.1 3,263,923 + ECD_03111 0.71 +0.2 3,263,923 + ECD_03111 0.71 -1.9 3,263,923 + ECD_03111 0.71 +0.2 3,263,924 - ECD_03111 0.71 +0.1 3,263,924 - ECD_03111 0.71 +0.4 3,263,924 - ECD_03111 0.71 -0.6 3,263,924 - ECD_03111 0.71 +1.0 3,263,924 - ECD_03111 0.71 +1.7 3,263,924 - ECD_03111 0.71 +0.6 3,263,961 + ECD_03111 0.73 -0.6 3,263,962 - ECD_03111 0.73 +0.4 3,263,966 + ECD_03111 0.73 -1.1 3,264,041 + ECD_03111 0.77 +0.3 3,264,041 + ECD_03111 0.77 +0.9 3,264,042 - ECD_03111 0.77 +0.3 3,264,042 - ECD_03111 0.77 +0.7 3,264,100 + ECD_03111 0.80 -0.1 3,264,100 + ECD_03111 0.80 +0.6 3,264,100 + ECD_03111 0.80 -0.0 3,264,101 - ECD_03111 0.80 +0.5 3,264,101 - ECD_03111 0.80 +0.4 3,264,206 - ECD_03111 0.85 +1.0 3,264,206 - ECD_03111 0.85 +1.1 3,264,206 - ECD_03111 0.85 -1.2 3,264,206 - ECD_03111 0.85 +0.4 3,264,209 + ECD_03111 0.86 +0.6 3,264,210 - ECD_03111 0.86 +0.5 3,264,210 - ECD_03111 0.86 -1.0 3,264,210 - ECD_03111 0.86 +0.7 3,264,210 - ECD_03111 0.86 +0.1 3,264,210 - ECD_03111 0.86 -0.0 3,264,227 + ECD_03111 0.87 +0.6 3,264,228 - ECD_03111 0.87 -0.5 3,264,228 - ECD_03111 0.87 -0.3 3,264,228 - ECD_03111 0.87 +0.4 3,264,229 + ECD_03111 0.87 +0.7 3,264,229 + ECD_03111 0.87 +0.3 3,264,230 - ECD_03111 0.87 +0.7 3,264,230 - ECD_03111 0.87 +0.1 3,264,285 + ECD_03111 0.89 -0.0 3,264,285 + ECD_03111 0.89 +0.0 3,264,285 + ECD_03111 0.89 +0.8 3,264,285 + ECD_03111 0.89 +0.0 3,264,285 + ECD_03111 0.89 +1.2 3,264,286 - ECD_03111 0.90 -0.0 3,264,286 - ECD_03111 0.90 -0.0 3,264,306 + -0.2 3,264,306 + -1.2 3,264,306 + -1.2 3,264,306 + +0.3 3,264,307 - -0.9 3,264,307 - -0.3 3,264,307 - +0.6 3,264,307 - +0.3 3,264,307 - -0.6 3,264,307 - -0.8 3,264,309 + +0.1 3,264,310 - -0.4 3,264,374 + +0.2 3,264,375 - -0.3 3,264,380 + +0.3 3,264,380 + +0.3 3,264,380 + -0.0 3,264,380 + +0.6 3,264,380 + +0.2 3,264,381 - -0.4 3,264,381 - -0.4 3,264,382 + +0.4 3,264,398 - +0.1 3,264,398 - +0.3 3,264,455 + -0.4 3,264,455 + +0.5 3,264,480 + +0.2 3,264,498 - +0.8 3,264,524 - -0.8 3,264,526 + -0.0 3,264,527 - +1.3 3,264,541 - -0.9 3,264,552 + +0.4 3,264,591 + +0.0 3,264,592 - +0.1 3,264,606 - -1.2 3,264,639 + -0.6 3,264,640 - +0.7 3,264,640 - +2.0 3,264,640 - -0.3 3,264,690 - -0.2 3,264,760 + ECD_03112 0.12 -0.9 3,264,760 + ECD_03112 0.12 +0.2 3,264,761 - ECD_03112 0.12 +0.3 3,264,763 - ECD_03112 0.13 +0.0 3,265,026 + ECD_03112 0.40 -0.5 3,265,143 + ECD_03112 0.52 -0.7 3,265,144 - ECD_03112 0.52 +0.9 3,265,144 - ECD_03112 0.52 +0.3 3,265,144 - ECD_03112 0.52 +0.4 3,265,144 - ECD_03112 0.52 +0.6 3,265,186 - ECD_03112 0.56 -0.5 3,265,186 - ECD_03112 0.56 -0.6 3,265,378 - ECD_03112 0.76 +0.1 3,265,413 + ECD_03112 0.79 +0.2 3,265,413 + ECD_03112 0.79 -0.8 3,265,414 - ECD_03112 0.79 -0.6
Or see this region's nucleotide sequence