Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03020 and ECD_03021 overlap by 21 nucleotides ECD_03021 and ECD_03022 are separated by 50 nucleotides ECD_03022 and ECD_03023 overlap by 14 nucleotides ECD_03023 and ECD_03024 overlap by 7 nucleotides
ECD_03020: ECD_03020 - stress-resistance protein, at 3,167,473 to 3,167,991
_03020
ECD_03021: ECD_03021 - UPF0306 family protein, at 3,167,971 to 3,168,414
_03021
ECD_03022: ECD_03022 - GIY-YIG nuclease superfamily protein, at 3,168,465 to 3,168,767
_03022
ECD_03023: ECD_03023 - GNAT family putative N-acetyltransferase, at 3,168,754 to 3,169,257
_03023
ECD_03024: ECD_03024 - SCP-2 sterol transfer family protein, at 3,169,251 to 3,169,775
_03024
Position (kb)
3168
3169 Strain fitness (log2 ratio)
-1
0
1 at 3167.526 kb on + strand, within ECD_03020 at 3167.637 kb on + strand, within ECD_03020 at 3167.707 kb on + strand, within ECD_03020 at 3167.707 kb on + strand, within ECD_03020 at 3167.708 kb on - strand, within ECD_03020 at 3167.708 kb on - strand, within ECD_03020 at 3168.214 kb on + strand, within ECD_03021 at 3168.314 kb on + strand, within ECD_03021 at 3168.428 kb on + strand at 3168.429 kb on - strand at 3168.430 kb on + strand at 3168.431 kb on - strand at 3168.431 kb on - strand at 3168.447 kb on + strand at 3168.447 kb on + strand at 3168.483 kb on + strand at 3168.506 kb on + strand, within ECD_03022 at 3168.507 kb on - strand, within ECD_03022 at 3168.730 kb on + strand, within ECD_03022 at 3168.755 kb on + strand at 3168.908 kb on + strand, within ECD_03023 at 3168.908 kb on + strand, within ECD_03023 at 3168.909 kb on - strand, within ECD_03023 at 3169.092 kb on - strand, within ECD_03023 at 3169.267 kb on - strand at 3169.396 kb on + strand, within ECD_03024 at 3169.396 kb on + strand, within ECD_03024 at 3169.397 kb on - strand, within ECD_03024 at 3169.598 kb on + strand, within ECD_03024 at 3169.598 kb on + strand, within ECD_03024 at 3169.598 kb on + strand, within ECD_03024 at 3169.598 kb on + strand, within ECD_03024 at 3169.599 kb on - strand, within ECD_03024 at 3169.599 kb on - strand, within ECD_03024 at 3169.599 kb on - strand, within ECD_03024 at 3169.599 kb on - strand, within ECD_03024 at 3169.602 kb on + strand, within ECD_03024 at 3169.666 kb on - strand, within ECD_03024 at 3169.751 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 3,167,526 + ECD_03020 0.10 +0.7 3,167,637 + ECD_03020 0.32 -1.3 3,167,707 + ECD_03020 0.45 -0.0 3,167,707 + ECD_03020 0.45 +0.9 3,167,708 - ECD_03020 0.45 -0.3 3,167,708 - ECD_03020 0.45 +0.0 3,168,214 + ECD_03021 0.55 +0.6 3,168,314 + ECD_03021 0.77 +0.9 3,168,428 + +1.1 3,168,429 - -1.0 3,168,430 + -0.3 3,168,431 - -0.3 3,168,431 - -1.0 3,168,447 + +0.2 3,168,447 + +0.4 3,168,483 + -0.9 3,168,506 + ECD_03022 0.14 -0.8 3,168,507 - ECD_03022 0.14 -0.1 3,168,730 + ECD_03022 0.87 -0.3 3,168,755 + +0.4 3,168,908 + ECD_03023 0.31 +1.2 3,168,908 + ECD_03023 0.31 +0.1 3,168,909 - ECD_03023 0.31 +0.2 3,169,092 - ECD_03023 0.67 +1.4 3,169,267 - +0.0 3,169,396 + ECD_03024 0.28 +0.3 3,169,396 + ECD_03024 0.28 -0.2 3,169,397 - ECD_03024 0.28 +0.1 3,169,598 + ECD_03024 0.66 +0.4 3,169,598 + ECD_03024 0.66 -1.0 3,169,598 + ECD_03024 0.66 +0.4 3,169,598 + ECD_03024 0.66 +1.1 3,169,599 - ECD_03024 0.66 -0.9 3,169,599 - ECD_03024 0.66 -0.6 3,169,599 - ECD_03024 0.66 -0.3 3,169,599 - ECD_03024 0.66 -1.1 3,169,602 + ECD_03024 0.67 -1.1 3,169,666 - ECD_03024 0.79 +0.5 3,169,751 + -0.7
Or see this region's nucleotide sequence