Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02984 and ECD_02985 are separated by 98 nucleotides ECD_02985 and ECD_02986 are separated by 314 nucleotides ECD_02986 and ECD_02987 are separated by 255 nucleotides
ECD_02984: ECD_02984 - L-threonine dehydratase, catabolic, at 3,131,338 to 3,132,327
_02984
ECD_02985: ECD_02985 - tdc operon transcriptional activator, at 3,132,426 to 3,133,364
_02985
ECD_02986: ECD_02986 - L-threonine dehydratase operon activator protein, at 3,133,679 to 3,133,897
_02986
ECD_02987: ECD_02987 - uncharacterized protein, at 3,134,153 to 3,134,692
_02987
Position (kb)
3132
3133
3134 Strain fitness (log2 ratio)
-2
-1
0
1 at 3131.509 kb on + strand, within ECD_02984 at 3131.654 kb on - strand, within ECD_02984 at 3131.808 kb on - strand, within ECD_02984 at 3132.139 kb on - strand, within ECD_02984 at 3132.588 kb on - strand, within ECD_02985 at 3132.728 kb on + strand, within ECD_02985 at 3132.728 kb on + strand, within ECD_02985 at 3132.731 kb on + strand, within ECD_02985 at 3132.745 kb on + strand, within ECD_02985 at 3132.748 kb on + strand, within ECD_02985 at 3132.758 kb on + strand, within ECD_02985 at 3132.876 kb on + strand, within ECD_02985 at 3132.904 kb on - strand, within ECD_02985 at 3132.973 kb on + strand, within ECD_02985 at 3132.973 kb on + strand, within ECD_02985 at 3132.974 kb on - strand, within ECD_02985 at 3132.978 kb on - strand, within ECD_02985 at 3132.978 kb on - strand, within ECD_02985 at 3132.978 kb on - strand, within ECD_02985 at 3133.032 kb on - strand, within ECD_02985 at 3133.095 kb on - strand, within ECD_02985 at 3133.177 kb on - strand, within ECD_02985 at 3134.110 kb on + strand at 3134.121 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 3,131,509 + ECD_02984 0.17 -2.3 3,131,654 - ECD_02984 0.32 -0.3 3,131,808 - ECD_02984 0.47 -0.6 3,132,139 - ECD_02984 0.81 +0.1 3,132,588 - ECD_02985 0.17 -0.2 3,132,728 + ECD_02985 0.32 +0.2 3,132,728 + ECD_02985 0.32 +0.9 3,132,731 + ECD_02985 0.32 +0.1 3,132,745 + ECD_02985 0.34 +0.6 3,132,748 + ECD_02985 0.34 +0.8 3,132,758 + ECD_02985 0.35 -0.3 3,132,876 + ECD_02985 0.48 +0.5 3,132,904 - ECD_02985 0.51 -0.9 3,132,973 + ECD_02985 0.58 -0.2 3,132,973 + ECD_02985 0.58 +0.1 3,132,974 - ECD_02985 0.58 +0.8 3,132,978 - ECD_02985 0.59 -0.0 3,132,978 - ECD_02985 0.59 +0.3 3,132,978 - ECD_02985 0.59 -0.9 3,133,032 - ECD_02985 0.65 +0.7 3,133,095 - ECD_02985 0.71 +0.5 3,133,177 - ECD_02985 0.80 +1.3 3,134,110 + +0.4 3,134,121 + -0.6
Or see this region's nucleotide sequence