Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02983 and ECD_02984 are separated by 21 nucleotides ECD_02984 and ECD_02985 are separated by 98 nucleotides
ECD_02983: ECD_02983 - L-threonine/L-serine transporter, at 3,129,985 to 3,131,316
_02983
ECD_02984: ECD_02984 - L-threonine dehydratase, catabolic, at 3,131,338 to 3,132,327
_02984
ECD_02985: ECD_02985 - tdc operon transcriptional activator, at 3,132,426 to 3,133,364
_02985
Position (kb)
3131
3132
3133 Strain fitness (log2 ratio)
-2
-1
0
1 at 3130.447 kb on - strand, within ECD_02983 at 3130.447 kb on - strand, within ECD_02983 at 3130.488 kb on + strand, within ECD_02983 at 3130.501 kb on - strand, within ECD_02983 at 3130.567 kb on - strand, within ECD_02983 at 3130.567 kb on - strand, within ECD_02983 at 3130.602 kb on - strand, within ECD_02983 at 3130.614 kb on + strand, within ECD_02983 at 3130.615 kb on - strand, within ECD_02983 at 3130.813 kb on + strand, within ECD_02983 at 3130.814 kb on - strand, within ECD_02983 at 3130.821 kb on - strand, within ECD_02983 at 3130.948 kb on - strand, within ECD_02983 at 3130.963 kb on - strand, within ECD_02983 at 3130.963 kb on - strand, within ECD_02983 at 3130.963 kb on - strand, within ECD_02983 at 3130.963 kb on - strand, within ECD_02983 at 3130.963 kb on - strand, within ECD_02983 at 3131.006 kb on + strand, within ECD_02983 at 3131.006 kb on + strand, within ECD_02983 at 3131.007 kb on - strand, within ECD_02983 at 3131.124 kb on - strand, within ECD_02983 at 3131.124 kb on - strand, within ECD_02983 at 3131.139 kb on - strand, within ECD_02983 at 3131.139 kb on - strand, within ECD_02983 at 3131.139 kb on - strand, within ECD_02983 at 3131.239 kb on + strand at 3131.263 kb on - strand at 3131.294 kb on - strand at 3131.311 kb on - strand at 3131.322 kb on - strand at 3131.509 kb on + strand, within ECD_02984 at 3131.654 kb on - strand, within ECD_02984 at 3131.808 kb on - strand, within ECD_02984 at 3132.139 kb on - strand, within ECD_02984 at 3132.588 kb on - strand, within ECD_02985 at 3132.728 kb on + strand, within ECD_02985 at 3132.728 kb on + strand, within ECD_02985 at 3132.731 kb on + strand, within ECD_02985 at 3132.745 kb on + strand, within ECD_02985 at 3132.748 kb on + strand, within ECD_02985 at 3132.758 kb on + strand, within ECD_02985 at 3132.876 kb on + strand, within ECD_02985 at 3132.904 kb on - strand, within ECD_02985 at 3132.973 kb on + strand, within ECD_02985 at 3132.973 kb on + strand, within ECD_02985 at 3132.974 kb on - strand, within ECD_02985 at 3132.978 kb on - strand, within ECD_02985 at 3132.978 kb on - strand, within ECD_02985 at 3132.978 kb on - strand, within ECD_02985 at 3133.032 kb on - strand, within ECD_02985 at 3133.095 kb on - strand, within ECD_02985 at 3133.177 kb on - strand, within ECD_02985
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 3,130,447 - ECD_02983 0.35 +0.3 3,130,447 - ECD_02983 0.35 -0.8 3,130,488 + ECD_02983 0.38 +0.5 3,130,501 - ECD_02983 0.39 +0.4 3,130,567 - ECD_02983 0.44 +0.1 3,130,567 - ECD_02983 0.44 +0.4 3,130,602 - ECD_02983 0.46 -0.1 3,130,614 + ECD_02983 0.47 +0.0 3,130,615 - ECD_02983 0.47 -0.6 3,130,813 + ECD_02983 0.62 +0.5 3,130,814 - ECD_02983 0.62 -0.5 3,130,821 - ECD_02983 0.63 -0.4 3,130,948 - ECD_02983 0.72 +0.8 3,130,963 - ECD_02983 0.73 +0.6 3,130,963 - ECD_02983 0.73 -0.6 3,130,963 - ECD_02983 0.73 -0.6 3,130,963 - ECD_02983 0.73 -0.2 3,130,963 - ECD_02983 0.73 +0.5 3,131,006 + ECD_02983 0.77 -1.3 3,131,006 + ECD_02983 0.77 -1.5 3,131,007 - ECD_02983 0.77 +0.0 3,131,124 - ECD_02983 0.86 +0.4 3,131,124 - ECD_02983 0.86 +1.0 3,131,139 - ECD_02983 0.87 -0.3 3,131,139 - ECD_02983 0.87 -0.3 3,131,139 - ECD_02983 0.87 +0.1 3,131,239 + -0.5 3,131,263 - +0.8 3,131,294 - -0.0 3,131,311 - +0.1 3,131,322 - -1.1 3,131,509 + ECD_02984 0.17 -2.3 3,131,654 - ECD_02984 0.32 -0.3 3,131,808 - ECD_02984 0.47 -0.6 3,132,139 - ECD_02984 0.81 +0.1 3,132,588 - ECD_02985 0.17 -0.2 3,132,728 + ECD_02985 0.32 +0.2 3,132,728 + ECD_02985 0.32 +0.9 3,132,731 + ECD_02985 0.32 +0.1 3,132,745 + ECD_02985 0.34 +0.6 3,132,748 + ECD_02985 0.34 +0.8 3,132,758 + ECD_02985 0.35 -0.3 3,132,876 + ECD_02985 0.48 +0.5 3,132,904 - ECD_02985 0.51 -0.9 3,132,973 + ECD_02985 0.58 -0.2 3,132,973 + ECD_02985 0.58 +0.1 3,132,974 - ECD_02985 0.58 +0.8 3,132,978 - ECD_02985 0.59 -0.0 3,132,978 - ECD_02985 0.59 +0.3 3,132,978 - ECD_02985 0.59 -0.9 3,133,032 - ECD_02985 0.65 +0.7 3,133,095 - ECD_02985 0.71 +0.5 3,133,177 - ECD_02985 0.80 +1.3
Or see this region's nucleotide sequence