Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02957 and ECD_02958 are separated by 615 nucleotides ECD_02958 and ECD_02959 are separated by 4 nucleotides ECD_02959 and ECD_02960 are separated by 82 nucleotides
ECD_02957: ECD_02957 - putative membrane-bound redox modulator, at 3,104,662 to 3,105,627
_02957
ECD_02958: ECD_02958 - sodium:serine/threonine symporter, at 3,106,243 to 3,107,487
_02958
ECD_02959: ECD_02959 - Imp-YgjV family inner membrane protein, at 3,107,492 to 3,108,043
_02959
ECD_02960: ECD_02960 - altronate hydrolase, at 3,108,126 to 3,109,613
_02960
Position (kb)
3106
3107
3108 Strain fitness (log2 ratio)
-2
-1
0
1 at 3105.246 kb on + strand, within ECD_02957 at 3105.246 kb on + strand, within ECD_02957 at 3105.247 kb on - strand, within ECD_02957 at 3105.247 kb on - strand, within ECD_02957 at 3105.416 kb on - strand, within ECD_02957 at 3105.416 kb on - strand, within ECD_02957 at 3105.416 kb on - strand, within ECD_02957 at 3105.416 kb on - strand, within ECD_02957 at 3105.435 kb on - strand, within ECD_02957 at 3105.435 kb on - strand, within ECD_02957 at 3105.517 kb on + strand, within ECD_02957 at 3105.517 kb on + strand, within ECD_02957 at 3105.517 kb on + strand, within ECD_02957 at 3105.518 kb on - strand, within ECD_02957 at 3105.523 kb on - strand, within ECD_02957 at 3105.580 kb on - strand at 3105.635 kb on + strand at 3105.640 kb on + strand at 3105.640 kb on + strand at 3105.641 kb on - strand at 3105.641 kb on - strand at 3105.641 kb on - strand at 3105.685 kb on + strand at 3105.685 kb on + strand at 3105.690 kb on - strand at 3105.690 kb on - strand at 3105.693 kb on + strand at 3105.704 kb on + strand at 3105.704 kb on + strand at 3105.705 kb on - strand at 3105.957 kb on + strand at 3105.957 kb on + strand at 3105.958 kb on - strand at 3105.960 kb on - strand at 3105.967 kb on - strand at 3105.975 kb on - strand at 3106.017 kb on + strand at 3106.017 kb on + strand at 3106.018 kb on - strand at 3106.018 kb on - strand at 3106.018 kb on - strand at 3106.018 kb on - strand at 3106.018 kb on - strand at 3106.026 kb on + strand at 3106.039 kb on + strand at 3106.149 kb on + strand at 3106.151 kb on + strand at 3106.175 kb on + strand at 3106.175 kb on + strand at 3106.379 kb on + strand, within ECD_02958 at 3106.380 kb on - strand, within ECD_02958 at 3106.383 kb on + strand, within ECD_02958 at 3106.384 kb on - strand, within ECD_02958 at 3106.449 kb on + strand, within ECD_02958 at 3106.450 kb on - strand, within ECD_02958 at 3106.450 kb on - strand, within ECD_02958 at 3106.450 kb on - strand, within ECD_02958 at 3106.450 kb on - strand, within ECD_02958 at 3106.504 kb on + strand, within ECD_02958 at 3106.541 kb on + strand, within ECD_02958 at 3106.541 kb on + strand, within ECD_02958 at 3106.597 kb on - strand, within ECD_02958 at 3106.687 kb on + strand, within ECD_02958 at 3106.687 kb on + strand, within ECD_02958 at 3106.687 kb on + strand, within ECD_02958 at 3106.687 kb on + strand, within ECD_02958 at 3106.687 kb on + strand, within ECD_02958 at 3106.688 kb on - strand, within ECD_02958 at 3106.771 kb on - strand, within ECD_02958 at 3106.771 kb on - strand, within ECD_02958 at 3106.771 kb on - strand, within ECD_02958 at 3106.771 kb on - strand, within ECD_02958 at 3106.791 kb on + strand, within ECD_02958 at 3106.917 kb on + strand, within ECD_02958 at 3106.917 kb on + strand, within ECD_02958 at 3106.917 kb on + strand, within ECD_02958 at 3106.918 kb on - strand, within ECD_02958 at 3106.918 kb on - strand, within ECD_02958 at 3106.918 kb on - strand, within ECD_02958 at 3106.922 kb on + strand, within ECD_02958 at 3107.020 kb on + strand, within ECD_02958 at 3107.020 kb on + strand, within ECD_02958 at 3107.021 kb on - strand, within ECD_02958 at 3107.021 kb on - strand, within ECD_02958 at 3107.065 kb on - strand, within ECD_02958 at 3107.100 kb on + strand, within ECD_02958 at 3107.100 kb on + strand, within ECD_02958 at 3107.100 kb on + strand, within ECD_02958 at 3107.100 kb on + strand, within ECD_02958 at 3107.105 kb on - strand, within ECD_02958 at 3107.115 kb on + strand, within ECD_02958 at 3107.116 kb on - strand, within ECD_02958 at 3107.164 kb on - strand, within ECD_02958 at 3107.190 kb on + strand, within ECD_02958 at 3107.190 kb on + strand, within ECD_02958 at 3107.190 kb on + strand, within ECD_02958 at 3107.310 kb on + strand, within ECD_02958 at 3107.313 kb on + strand, within ECD_02958 at 3107.313 kb on + strand, within ECD_02958 at 3107.314 kb on - strand, within ECD_02958 at 3107.314 kb on - strand, within ECD_02958 at 3107.314 kb on - strand, within ECD_02958 at 3107.314 kb on - strand, within ECD_02958 at 3107.314 kb on - strand, within ECD_02958 at 3107.323 kb on - strand, within ECD_02958 at 3107.482 kb on - strand at 3107.482 kb on - strand at 3107.725 kb on + strand, within ECD_02959 at 3107.753 kb on + strand, within ECD_02959 at 3107.754 kb on - strand, within ECD_02959 at 3107.754 kb on - strand, within ECD_02959 at 3107.754 kb on - strand, within ECD_02959 at 3107.826 kb on - strand, within ECD_02959 at 3107.840 kb on + strand, within ECD_02959 at 3107.840 kb on + strand, within ECD_02959 at 3107.841 kb on - strand, within ECD_02959 at 3107.845 kb on + strand, within ECD_02959 at 3107.845 kb on + strand, within ECD_02959 at 3107.846 kb on - strand, within ECD_02959 at 3107.846 kb on - strand, within ECD_02959 at 3107.854 kb on + strand, within ECD_02959 at 3107.854 kb on + strand, within ECD_02959 at 3107.855 kb on - strand, within ECD_02959 at 3107.855 kb on - strand, within ECD_02959 at 3107.933 kb on - strand, within ECD_02959 at 3107.934 kb on + strand, within ECD_02959 at 3108.047 kb on - strand at 3108.055 kb on - strand at 3108.127 kb on + strand at 3108.129 kb on + strand at 3108.135 kb on + strand at 3108.390 kb on - strand, within ECD_02960 at 3108.390 kb on - strand, within ECD_02960 at 3108.447 kb on + strand, within ECD_02960 at 3108.447 kb on + strand, within ECD_02960 at 3108.448 kb on - strand, within ECD_02960 at 3108.448 kb on - strand, within ECD_02960
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 3,105,246 + ECD_02957 0.60 -0.3 3,105,246 + ECD_02957 0.60 -0.5 3,105,247 - ECD_02957 0.61 +0.9 3,105,247 - ECD_02957 0.61 +0.8 3,105,416 - ECD_02957 0.78 +0.4 3,105,416 - ECD_02957 0.78 -0.5 3,105,416 - ECD_02957 0.78 -1.6 3,105,416 - ECD_02957 0.78 +0.7 3,105,435 - ECD_02957 0.80 +0.6 3,105,435 - ECD_02957 0.80 -0.0 3,105,517 + ECD_02957 0.89 -0.5 3,105,517 + ECD_02957 0.89 +0.1 3,105,517 + ECD_02957 0.89 -0.1 3,105,518 - ECD_02957 0.89 -0.9 3,105,523 - ECD_02957 0.89 +0.0 3,105,580 - +1.6 3,105,635 + +0.4 3,105,640 + -0.6 3,105,640 + +0.0 3,105,641 - -0.4 3,105,641 - +0.5 3,105,641 - +0.2 3,105,685 + -1.0 3,105,685 + +0.0 3,105,690 - -0.0 3,105,690 - -2.1 3,105,693 + -1.2 3,105,704 + -0.2 3,105,704 + +1.0 3,105,705 - +0.4 3,105,957 + +0.7 3,105,957 + -0.1 3,105,958 - +0.3 3,105,960 - +0.3 3,105,967 - -1.2 3,105,975 - -1.1 3,106,017 + -0.5 3,106,017 + -0.1 3,106,018 - +0.8 3,106,018 - -0.5 3,106,018 - +0.8 3,106,018 - -0.1 3,106,018 - +0.5 3,106,026 + +0.4 3,106,039 + -0.9 3,106,149 + -0.1 3,106,151 + -0.4 3,106,175 + -1.9 3,106,175 + -1.1 3,106,379 + ECD_02958 0.11 -1.0 3,106,380 - ECD_02958 0.11 +0.3 3,106,383 + ECD_02958 0.11 -0.1 3,106,384 - ECD_02958 0.11 -0.2 3,106,449 + ECD_02958 0.17 +0.3 3,106,450 - ECD_02958 0.17 +0.5 3,106,450 - ECD_02958 0.17 +0.6 3,106,450 - ECD_02958 0.17 +0.2 3,106,450 - ECD_02958 0.17 +0.9 3,106,504 + ECD_02958 0.21 -0.0 3,106,541 + ECD_02958 0.24 -0.1 3,106,541 + ECD_02958 0.24 -0.5 3,106,597 - ECD_02958 0.28 +0.4 3,106,687 + ECD_02958 0.36 -0.4 3,106,687 + ECD_02958 0.36 -0.3 3,106,687 + ECD_02958 0.36 -1.1 3,106,687 + ECD_02958 0.36 -0.1 3,106,687 + ECD_02958 0.36 +0.7 3,106,688 - ECD_02958 0.36 -0.5 3,106,771 - ECD_02958 0.42 +0.6 3,106,771 - ECD_02958 0.42 -0.1 3,106,771 - ECD_02958 0.42 -0.0 3,106,771 - ECD_02958 0.42 +1.5 3,106,791 + ECD_02958 0.44 +0.2 3,106,917 + ECD_02958 0.54 +1.1 3,106,917 + ECD_02958 0.54 -0.6 3,106,917 + ECD_02958 0.54 -0.2 3,106,918 - ECD_02958 0.54 -1.1 3,106,918 - ECD_02958 0.54 -0.6 3,106,918 - ECD_02958 0.54 +0.4 3,106,922 + ECD_02958 0.55 +0.0 3,107,020 + ECD_02958 0.62 -0.0 3,107,020 + ECD_02958 0.62 +0.2 3,107,021 - ECD_02958 0.62 +1.3 3,107,021 - ECD_02958 0.62 +1.7 3,107,065 - ECD_02958 0.66 +1.2 3,107,100 + ECD_02958 0.69 +1.7 3,107,100 + ECD_02958 0.69 -0.0 3,107,100 + ECD_02958 0.69 +0.9 3,107,100 + ECD_02958 0.69 +0.2 3,107,105 - ECD_02958 0.69 -0.8 3,107,115 + ECD_02958 0.70 +0.9 3,107,116 - ECD_02958 0.70 -0.4 3,107,164 - ECD_02958 0.74 -0.3 3,107,190 + ECD_02958 0.76 +0.9 3,107,190 + ECD_02958 0.76 -0.1 3,107,190 + ECD_02958 0.76 -0.9 3,107,310 + ECD_02958 0.86 -1.6 3,107,313 + ECD_02958 0.86 +0.5 3,107,313 + ECD_02958 0.86 +0.5 3,107,314 - ECD_02958 0.86 +0.5 3,107,314 - ECD_02958 0.86 -0.0 3,107,314 - ECD_02958 0.86 -1.0 3,107,314 - ECD_02958 0.86 +0.1 3,107,314 - ECD_02958 0.86 +1.7 3,107,323 - ECD_02958 0.87 +1.4 3,107,482 - +0.7 3,107,482 - -0.4 3,107,725 + ECD_02959 0.42 -0.0 3,107,753 + ECD_02959 0.47 +0.1 3,107,754 - ECD_02959 0.47 +0.3 3,107,754 - ECD_02959 0.47 +0.4 3,107,754 - ECD_02959 0.47 -0.6 3,107,826 - ECD_02959 0.61 +0.8 3,107,840 + ECD_02959 0.63 -0.0 3,107,840 + ECD_02959 0.63 -0.2 3,107,841 - ECD_02959 0.63 -0.9 3,107,845 + ECD_02959 0.64 -0.9 3,107,845 + ECD_02959 0.64 -1.6 3,107,846 - ECD_02959 0.64 +0.4 3,107,846 - ECD_02959 0.64 -0.6 3,107,854 + ECD_02959 0.66 +0.6 3,107,854 + ECD_02959 0.66 -0.1 3,107,855 - ECD_02959 0.66 +1.1 3,107,855 - ECD_02959 0.66 +0.0 3,107,933 - ECD_02959 0.80 +0.4 3,107,934 + ECD_02959 0.80 +0.7 3,108,047 - +0.1 3,108,055 - -0.2 3,108,127 + +0.1 3,108,129 + +0.2 3,108,135 + -0.2 3,108,390 - ECD_02960 0.18 +0.5 3,108,390 - ECD_02960 0.18 -0.2 3,108,447 + ECD_02960 0.22 -0.1 3,108,447 + ECD_02960 0.22 +0.4 3,108,448 - ECD_02960 0.22 +0.7 3,108,448 - ECD_02960 0.22 -0.0
Or see this region's nucleotide sequence