Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02883 and ECD_02884 are separated by 136 nucleotides ECD_02884 and ECD_02885 are separated by 104 nucleotides
ECD_02883: ECD_02883 - transcriptional activator of yqhD, at 3,021,699 to 3,022,655
_02883
ECD_02884: ECD_02884 - aldehyde reductase, NADPH-dependent, at 3,022,792 to 3,023,955
_02884
ECD_02885: ECD_02885 - 2,5-diketo-D-gluconate reductase A, at 3,024,060 to 3,024,887
_02885
Position (kb)
3022
3023
3024 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3021.860 kb on + strand, within ECD_02883 at 3021.871 kb on + strand, within ECD_02883 at 3021.872 kb on - strand, within ECD_02883 at 3021.884 kb on - strand, within ECD_02883 at 3021.914 kb on + strand, within ECD_02883 at 3021.915 kb on - strand, within ECD_02883 at 3021.989 kb on - strand, within ECD_02883 at 3021.989 kb on - strand, within ECD_02883 at 3021.992 kb on + strand, within ECD_02883 at 3021.993 kb on - strand, within ECD_02883 at 3022.090 kb on + strand, within ECD_02883 at 3022.090 kb on + strand, within ECD_02883 at 3022.090 kb on + strand, within ECD_02883 at 3022.091 kb on - strand, within ECD_02883 at 3022.091 kb on - strand, within ECD_02883 at 3022.091 kb on - strand, within ECD_02883 at 3022.093 kb on + strand, within ECD_02883 at 3022.128 kb on - strand, within ECD_02883 at 3022.179 kb on + strand, within ECD_02883 at 3022.276 kb on - strand, within ECD_02883 at 3022.287 kb on - strand, within ECD_02883 at 3022.376 kb on - strand, within ECD_02883 at 3022.376 kb on - strand, within ECD_02883 at 3022.376 kb on - strand, within ECD_02883 at 3022.376 kb on - strand, within ECD_02883 at 3022.376 kb on - strand, within ECD_02883 at 3022.390 kb on + strand, within ECD_02883 at 3022.444 kb on - strand, within ECD_02883 at 3022.766 kb on + strand at 3022.766 kb on + strand at 3022.767 kb on - strand at 3022.887 kb on - strand at 3022.887 kb on - strand at 3022.897 kb on + strand at 3022.898 kb on - strand at 3022.983 kb on + strand, within ECD_02884 at 3023.119 kb on + strand, within ECD_02884 at 3023.173 kb on - strand, within ECD_02884 at 3023.254 kb on - strand, within ECD_02884 at 3023.326 kb on + strand, within ECD_02884 at 3023.326 kb on + strand, within ECD_02884 at 3023.327 kb on - strand, within ECD_02884 at 3023.328 kb on + strand, within ECD_02884 at 3023.328 kb on + strand, within ECD_02884 at 3023.329 kb on - strand, within ECD_02884 at 3023.332 kb on + strand, within ECD_02884 at 3023.332 kb on + strand, within ECD_02884 at 3023.333 kb on - strand, within ECD_02884 at 3023.333 kb on - strand, within ECD_02884 at 3023.381 kb on + strand, within ECD_02884 at 3023.382 kb on - strand, within ECD_02884 at 3023.398 kb on + strand, within ECD_02884 at 3023.398 kb on + strand, within ECD_02884 at 3023.398 kb on + strand, within ECD_02884 at 3023.398 kb on + strand, within ECD_02884 at 3023.399 kb on - strand, within ECD_02884 at 3023.404 kb on - strand, within ECD_02884 at 3023.404 kb on - strand, within ECD_02884 at 3023.462 kb on + strand, within ECD_02884 at 3023.503 kb on + strand, within ECD_02884 at 3023.504 kb on - strand, within ECD_02884 at 3023.592 kb on + strand, within ECD_02884 at 3023.592 kb on + strand, within ECD_02884 at 3023.698 kb on - strand, within ECD_02884 at 3023.710 kb on + strand, within ECD_02884 at 3023.711 kb on - strand, within ECD_02884 at 3023.757 kb on + strand, within ECD_02884 at 3023.913 kb on + strand at 3023.913 kb on + strand at 3023.913 kb on + strand at 3023.913 kb on + strand at 3023.913 kb on + strand at 3023.913 kb on + strand at 3023.913 kb on + strand at 3023.913 kb on + strand at 3023.914 kb on - strand at 3023.934 kb on + strand at 3023.934 kb on + strand at 3023.934 kb on + strand at 3023.935 kb on - strand at 3023.935 kb on - strand at 3023.935 kb on - strand at 3023.935 kb on - strand at 3023.935 kb on - strand at 3023.935 kb on - strand at 3023.936 kb on + strand at 3023.936 kb on + strand at 3023.936 kb on + strand at 3023.938 kb on + strand at 3023.938 kb on + strand at 3023.939 kb on - strand at 3023.939 kb on - strand at 3024.002 kb on + strand at 3024.002 kb on + strand at 3024.002 kb on + strand at 3024.002 kb on + strand at 3024.003 kb on - strand at 3024.003 kb on - strand at 3024.003 kb on - strand at 3024.044 kb on + strand at 3024.044 kb on + strand at 3024.044 kb on + strand at 3024.045 kb on - strand at 3024.046 kb on + strand at 3024.046 kb on + strand at 3024.046 kb on + strand at 3024.046 kb on + strand at 3024.059 kb on + strand at 3024.059 kb on + strand at 3024.060 kb on - strand at 3024.060 kb on - strand at 3024.060 kb on - strand at 3024.080 kb on + strand at 3024.080 kb on + strand at 3024.086 kb on - strand at 3024.138 kb on - strand at 3024.211 kb on - strand, within ECD_02885 at 3024.357 kb on + strand, within ECD_02885 at 3024.357 kb on + strand, within ECD_02885 at 3024.357 kb on + strand, within ECD_02885 at 3024.373 kb on + strand, within ECD_02885 at 3024.373 kb on + strand, within ECD_02885 at 3024.373 kb on + strand, within ECD_02885 at 3024.373 kb on + strand, within ECD_02885 at 3024.406 kb on - strand, within ECD_02885 at 3024.452 kb on - strand, within ECD_02885 at 3024.532 kb on + strand, within ECD_02885 at 3024.575 kb on - strand, within ECD_02885 at 3024.681 kb on - strand, within ECD_02885 at 3024.681 kb on - strand, within ECD_02885 at 3024.685 kb on - strand, within ECD_02885 at 3024.770 kb on + strand, within ECD_02885 at 3024.912 kb on - strand at 3024.946 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 3,021,860 + ECD_02883 0.17 +1.0 3,021,871 + ECD_02883 0.18 -0.3 3,021,872 - ECD_02883 0.18 +0.3 3,021,884 - ECD_02883 0.19 +0.6 3,021,914 + ECD_02883 0.22 +0.8 3,021,915 - ECD_02883 0.23 -0.9 3,021,989 - ECD_02883 0.30 +0.6 3,021,989 - ECD_02883 0.30 -0.1 3,021,992 + ECD_02883 0.31 -0.1 3,021,993 - ECD_02883 0.31 +1.2 3,022,090 + ECD_02883 0.41 -0.4 3,022,090 + ECD_02883 0.41 -0.2 3,022,090 + ECD_02883 0.41 +0.8 3,022,091 - ECD_02883 0.41 -0.1 3,022,091 - ECD_02883 0.41 -1.5 3,022,091 - ECD_02883 0.41 +0.6 3,022,093 + ECD_02883 0.41 -0.6 3,022,128 - ECD_02883 0.45 -1.0 3,022,179 + ECD_02883 0.50 -0.1 3,022,276 - ECD_02883 0.60 +0.2 3,022,287 - ECD_02883 0.61 +0.4 3,022,376 - ECD_02883 0.71 -0.9 3,022,376 - ECD_02883 0.71 -0.0 3,022,376 - ECD_02883 0.71 -0.7 3,022,376 - ECD_02883 0.71 +0.5 3,022,376 - ECD_02883 0.71 +1.3 3,022,390 + ECD_02883 0.72 +0.1 3,022,444 - ECD_02883 0.78 +0.3 3,022,766 + -1.3 3,022,766 + -0.3 3,022,767 - -0.5 3,022,887 - -1.2 3,022,887 - +0.0 3,022,897 + +0.5 3,022,898 - +0.9 3,022,983 + ECD_02884 0.16 +0.4 3,023,119 + ECD_02884 0.28 -2.0 3,023,173 - ECD_02884 0.33 +0.1 3,023,254 - ECD_02884 0.40 -0.5 3,023,326 + ECD_02884 0.46 -0.2 3,023,326 + ECD_02884 0.46 -1.9 3,023,327 - ECD_02884 0.46 -0.3 3,023,328 + ECD_02884 0.46 +0.2 3,023,328 + ECD_02884 0.46 -0.3 3,023,329 - ECD_02884 0.46 +1.9 3,023,332 + ECD_02884 0.46 -1.2 3,023,332 + ECD_02884 0.46 -0.4 3,023,333 - ECD_02884 0.46 -0.8 3,023,333 - ECD_02884 0.46 +0.1 3,023,381 + ECD_02884 0.51 -2.1 3,023,382 - ECD_02884 0.51 -1.4 3,023,398 + ECD_02884 0.52 +0.7 3,023,398 + ECD_02884 0.52 -1.4 3,023,398 + ECD_02884 0.52 +0.9 3,023,398 + ECD_02884 0.52 -0.4 3,023,399 - ECD_02884 0.52 -0.7 3,023,404 - ECD_02884 0.53 +0.4 3,023,404 - ECD_02884 0.53 -0.3 3,023,462 + ECD_02884 0.58 -0.4 3,023,503 + ECD_02884 0.61 -0.1 3,023,504 - ECD_02884 0.61 -1.1 3,023,592 + ECD_02884 0.69 +0.1 3,023,592 + ECD_02884 0.69 -0.9 3,023,698 - ECD_02884 0.78 -0.0 3,023,710 + ECD_02884 0.79 +0.1 3,023,711 - ECD_02884 0.79 +0.6 3,023,757 + ECD_02884 0.83 -0.0 3,023,913 + +0.1 3,023,913 + -0.7 3,023,913 + -0.8 3,023,913 + -0.9 3,023,913 + +0.5 3,023,913 + +0.4 3,023,913 + +0.1 3,023,913 + +0.4 3,023,914 - +1.3 3,023,934 + -0.6 3,023,934 + -0.2 3,023,934 + +0.3 3,023,935 - -1.0 3,023,935 - +0.7 3,023,935 - -0.2 3,023,935 - -0.2 3,023,935 - -1.1 3,023,935 - -0.3 3,023,936 + -0.1 3,023,936 + -0.5 3,023,936 + +0.7 3,023,938 + +0.3 3,023,938 + -0.7 3,023,939 - +0.1 3,023,939 - +0.7 3,024,002 + -0.1 3,024,002 + +0.6 3,024,002 + +0.7 3,024,002 + -0.7 3,024,003 - +0.4 3,024,003 - -1.9 3,024,003 - +1.1 3,024,044 + -0.3 3,024,044 + -1.1 3,024,044 + -0.7 3,024,045 - +0.4 3,024,046 + +0.2 3,024,046 + +0.1 3,024,046 + +0.8 3,024,046 + -2.4 3,024,059 + +0.1 3,024,059 + -0.5 3,024,060 - -1.0 3,024,060 - -0.7 3,024,060 - -0.4 3,024,080 + +0.1 3,024,080 + +0.2 3,024,086 - -0.8 3,024,138 - -0.9 3,024,211 - ECD_02885 0.18 -0.2 3,024,357 + ECD_02885 0.36 +0.0 3,024,357 + ECD_02885 0.36 +0.8 3,024,357 + ECD_02885 0.36 -0.2 3,024,373 + ECD_02885 0.38 -1.1 3,024,373 + ECD_02885 0.38 -0.2 3,024,373 + ECD_02885 0.38 +0.8 3,024,373 + ECD_02885 0.38 -0.7 3,024,406 - ECD_02885 0.42 +0.5 3,024,452 - ECD_02885 0.47 +0.1 3,024,532 + ECD_02885 0.57 +0.1 3,024,575 - ECD_02885 0.62 +1.5 3,024,681 - ECD_02885 0.75 -0.8 3,024,681 - ECD_02885 0.75 +0.9 3,024,685 - ECD_02885 0.75 -0.3 3,024,770 + ECD_02885 0.86 +0.1 3,024,912 - +1.1 3,024,946 - -0.2
Or see this region's nucleotide sequence