Strain Fitness in Escherichia coli BL21 around ECD_02848

Experiment: N4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02847 and ECD_02848 overlap by 1 nucleotidesECD_02848 and ECD_02849 are separated by 250 nucleotides ECD_02847: ECD_02847 - glycolate oxidase FAD binding subunit, at 2,985,709 to 2,986,761 _02847 ECD_02848: ECD_02848 - glycolate oxidase subunit, FAD-linked, at 2,986,761 to 2,988,260 _02848 ECD_02849: ECD_02849 - glycolate-inducible glc operon transcriptional repressor; autorepressor, at 2,988,511 to 2,989,275 _02849 Position (kb) 2986 2987 2988 2989Strain fitness (log2 ratio) -1 0 1at 2985.769 kb on - strandat 2985.769 kb on - strandat 2985.780 kb on + strandat 2985.988 kb on + strand, within ECD_02847at 2985.989 kb on - strand, within ECD_02847at 2986.139 kb on + strand, within ECD_02847at 2986.139 kb on + strand, within ECD_02847at 2986.140 kb on - strand, within ECD_02847at 2986.144 kb on + strand, within ECD_02847at 2986.144 kb on + strand, within ECD_02847at 2986.144 kb on + strand, within ECD_02847at 2986.145 kb on - strand, within ECD_02847at 2986.145 kb on - strand, within ECD_02847at 2986.145 kb on - strand, within ECD_02847at 2986.145 kb on - strand, within ECD_02847at 2986.145 kb on - strand, within ECD_02847at 2986.152 kb on + strand, within ECD_02847at 2986.293 kb on - strand, within ECD_02847at 2986.293 kb on - strand, within ECD_02847at 2986.293 kb on - strand, within ECD_02847at 2986.574 kb on - strand, within ECD_02847at 2986.595 kb on + strand, within ECD_02847at 2986.599 kb on + strand, within ECD_02847at 2986.599 kb on + strand, within ECD_02847at 2986.599 kb on + strand, within ECD_02847at 2986.599 kb on + strand, within ECD_02847at 2986.655 kb on - strand, within ECD_02847at 2986.655 kb on - strand, within ECD_02847at 2986.704 kb on + strandat 2986.788 kb on + strandat 2986.789 kb on - strandat 2987.163 kb on + strand, within ECD_02848at 2987.206 kb on + strand, within ECD_02848at 2987.207 kb on - strand, within ECD_02848at 2987.207 kb on - strand, within ECD_02848at 2987.207 kb on - strand, within ECD_02848at 2987.209 kb on + strand, within ECD_02848at 2987.222 kb on + strand, within ECD_02848at 2987.222 kb on + strand, within ECD_02848at 2987.355 kb on + strand, within ECD_02848at 2987.356 kb on - strand, within ECD_02848at 2987.426 kb on + strand, within ECD_02848at 2987.426 kb on + strand, within ECD_02848at 2987.427 kb on - strand, within ECD_02848at 2987.427 kb on - strand, within ECD_02848at 2987.427 kb on - strand, within ECD_02848at 2987.615 kb on + strand, within ECD_02848at 2987.615 kb on + strand, within ECD_02848at 2987.615 kb on + strand, within ECD_02848at 2987.616 kb on - strand, within ECD_02848at 2987.733 kb on + strand, within ECD_02848at 2987.733 kb on + strand, within ECD_02848at 2987.805 kb on + strand, within ECD_02848at 2987.806 kb on - strand, within ECD_02848at 2987.830 kb on + strand, within ECD_02848at 2987.830 kb on + strand, within ECD_02848at 2987.831 kb on - strand, within ECD_02848at 2987.831 kb on - strand, within ECD_02848at 2987.831 kb on - strand, within ECD_02848at 2987.834 kb on - strand, within ECD_02848at 2988.248 kb on - strandat 2988.265 kb on - strandat 2988.265 kb on - strandat 2988.265 kb on - strandat 2988.325 kb on + strandat 2988.326 kb on - strandat 2988.326 kb on - strandat 2988.352 kb on - strandat 2988.359 kb on + strandat 2988.359 kb on + strandat 2988.468 kb on + strandat 2988.468 kb on + strandat 2988.489 kb on + strandat 2988.489 kb on + strandat 2988.490 kb on - strandat 2988.490 kb on - strandat 2988.493 kb on + strandat 2988.493 kb on + strandat 2988.532 kb on - strandat 2988.566 kb on + strandat 2988.570 kb on + strandat 2988.581 kb on + strandat 2988.793 kb on + strand, within ECD_02849at 2988.794 kb on - strand, within ECD_02849at 2988.819 kb on - strand, within ECD_02849at 2988.892 kb on + strand, within ECD_02849at 2989.014 kb on + strand, within ECD_02849at 2989.014 kb on + strand, within ECD_02849at 2989.015 kb on - strand, within ECD_02849at 2989.044 kb on + strand, within ECD_02849at 2989.064 kb on + strand, within ECD_02849at 2989.068 kb on + strand, within ECD_02849at 2989.069 kb on - strand, within ECD_02849at 2989.126 kb on + strand, within ECD_02849at 2989.126 kb on + strand, within ECD_02849at 2989.127 kb on - strand, within ECD_02849

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Per-strain Table

Position Strand Gene LocusTag Fraction N4
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2,985,769 - -0.8
2,985,769 - +0.2
2,985,780 + -0.6
2,985,988 + ECD_02847 0.26 +0.1
2,985,989 - ECD_02847 0.27 -0.8
2,986,139 + ECD_02847 0.41 -0.1
2,986,139 + ECD_02847 0.41 -0.0
2,986,140 - ECD_02847 0.41 +0.9
2,986,144 + ECD_02847 0.41 -0.5
2,986,144 + ECD_02847 0.41 -0.3
2,986,144 + ECD_02847 0.41 +0.9
2,986,145 - ECD_02847 0.41 +1.0
2,986,145 - ECD_02847 0.41 +0.3
2,986,145 - ECD_02847 0.41 +0.4
2,986,145 - ECD_02847 0.41 -0.4
2,986,145 - ECD_02847 0.41 +0.2
2,986,152 + ECD_02847 0.42 -0.5
2,986,293 - ECD_02847 0.55 -0.1
2,986,293 - ECD_02847 0.55 +0.6
2,986,293 - ECD_02847 0.55 -0.8
2,986,574 - ECD_02847 0.82 +0.3
2,986,595 + ECD_02847 0.84 +0.2
2,986,599 + ECD_02847 0.85 +0.3
2,986,599 + ECD_02847 0.85 +0.3
2,986,599 + ECD_02847 0.85 +0.0
2,986,599 + ECD_02847 0.85 +0.5
2,986,655 - ECD_02847 0.90 +0.6
2,986,655 - ECD_02847 0.90 +0.5
2,986,704 + +0.7
2,986,788 + -1.5
2,986,789 - -0.8
2,987,163 + ECD_02848 0.27 -0.2
2,987,206 + ECD_02848 0.30 -1.2
2,987,207 - ECD_02848 0.30 -0.4
2,987,207 - ECD_02848 0.30 -1.0
2,987,207 - ECD_02848 0.30 -1.0
2,987,209 + ECD_02848 0.30 +0.8
2,987,222 + ECD_02848 0.31 -0.1
2,987,222 + ECD_02848 0.31 -0.2
2,987,355 + ECD_02848 0.40 +0.8
2,987,356 - ECD_02848 0.40 -0.3
2,987,426 + ECD_02848 0.44 -0.6
2,987,426 + ECD_02848 0.44 -0.7
2,987,427 - ECD_02848 0.44 -0.6
2,987,427 - ECD_02848 0.44 +0.5
2,987,427 - ECD_02848 0.44 +0.9
2,987,615 + ECD_02848 0.57 -0.2
2,987,615 + ECD_02848 0.57 +0.0
2,987,615 + ECD_02848 0.57 -0.2
2,987,616 - ECD_02848 0.57 -0.2
2,987,733 + ECD_02848 0.65 +0.1
2,987,733 + ECD_02848 0.65 +0.4
2,987,805 + ECD_02848 0.70 -0.5
2,987,806 - ECD_02848 0.70 -0.0
2,987,830 + ECD_02848 0.71 +0.7
2,987,830 + ECD_02848 0.71 -0.5
2,987,831 - ECD_02848 0.71 +0.4
2,987,831 - ECD_02848 0.71 -0.9
2,987,831 - ECD_02848 0.71 -0.2
2,987,834 - ECD_02848 0.72 -0.2
2,988,248 - +0.2
2,988,265 - -0.3
2,988,265 - +0.6
2,988,265 - +0.0
2,988,325 + +0.0
2,988,326 - -1.1
2,988,326 - +1.3
2,988,352 - -0.2
2,988,359 + +0.4
2,988,359 + +0.7
2,988,468 + +0.6
2,988,468 + +0.6
2,988,489 + +0.2
2,988,489 + -0.4
2,988,490 - +0.3
2,988,490 - +0.3
2,988,493 + +0.2
2,988,493 + +0.9
2,988,532 - -1.1
2,988,566 + -1.2
2,988,570 + -0.0
2,988,581 + +0.4
2,988,793 + ECD_02849 0.37 -1.3
2,988,794 - ECD_02849 0.37 +0.2
2,988,819 - ECD_02849 0.40 +0.3
2,988,892 + ECD_02849 0.50 +0.3
2,989,014 + ECD_02849 0.66 +0.1
2,989,014 + ECD_02849 0.66 +0.1
2,989,015 - ECD_02849 0.66 -1.0
2,989,044 + ECD_02849 0.70 +0.6
2,989,064 + ECD_02849 0.72 +1.0
2,989,068 + ECD_02849 0.73 +0.0
2,989,069 - ECD_02849 0.73 +1.0
2,989,126 + ECD_02849 0.80 -0.1
2,989,126 + ECD_02849 0.80 +0.9
2,989,127 - ECD_02849 0.81 -0.6

Or see this region's nucleotide sequence