Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02735 and ECD_02736 are separated by 118 nucleotides ECD_02736 and ECD_02737 are separated by 23 nucleotides ECD_02737 and ECD_02738 are separated by 446 nucleotides
ECD_02735: ECD_02735 - glycine decarboxylase, PLP-dependent, subunit P of glycine cleavage complex, at 2,877,027 to 2,879,900
_02735
ECD_02736: ECD_02736 - glycine cleavage complex lipoylprotein, at 2,880,019 to 2,880,408
_02736
ECD_02737: ECD_02737 - aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex, at 2,880,432 to 2,881,526
_02737
ECD_02738: ECD_02738 - 2-octaprenylphenol hydroxylase, FAD-dependent, at 2,881,973 to 2,883,175
_02738
Position (kb)
2880
2881
2882 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2879.503 kb on - strand, within ECD_02735 at 2879.576 kb on - strand, within ECD_02735 at 2879.601 kb on - strand, within ECD_02735 at 2879.601 kb on - strand, within ECD_02735 at 2879.650 kb on + strand at 2879.650 kb on + strand at 2879.651 kb on - strand at 2879.651 kb on - strand at 2879.651 kb on - strand at 2879.651 kb on - strand at 2879.666 kb on + strand at 2879.682 kb on - strand at 2879.707 kb on + strand at 2879.754 kb on - strand at 2879.847 kb on - strand at 2879.859 kb on - strand at 2879.887 kb on - strand at 2879.947 kb on + strand at 2880.011 kb on + strand at 2880.011 kb on + strand at 2880.012 kb on - strand at 2880.012 kb on - strand at 2880.032 kb on - strand at 2880.032 kb on - strand at 2880.032 kb on - strand at 2880.045 kb on - strand at 2880.045 kb on - strand at 2880.119 kb on + strand, within ECD_02736 at 2880.198 kb on - strand, within ECD_02736 at 2880.335 kb on + strand, within ECD_02736 at 2880.335 kb on + strand, within ECD_02736 at 2880.335 kb on + strand, within ECD_02736 at 2880.381 kb on - strand at 2880.381 kb on - strand at 2880.381 kb on - strand at 2880.381 kb on - strand at 2880.398 kb on - strand at 2880.428 kb on + strand at 2880.528 kb on - strand at 2880.560 kb on - strand, within ECD_02737 at 2880.581 kb on + strand, within ECD_02737 at 2880.627 kb on - strand, within ECD_02737 at 2880.627 kb on - strand, within ECD_02737 at 2880.695 kb on + strand, within ECD_02737 at 2880.821 kb on - strand, within ECD_02737 at 2880.821 kb on - strand, within ECD_02737 at 2880.879 kb on - strand, within ECD_02737 at 2880.961 kb on + strand, within ECD_02737 at 2881.046 kb on + strand, within ECD_02737 at 2881.047 kb on - strand, within ECD_02737 at 2881.047 kb on - strand, within ECD_02737 at 2881.047 kb on - strand, within ECD_02737 at 2881.188 kb on - strand, within ECD_02737 at 2881.223 kb on - strand, within ECD_02737 at 2881.239 kb on + strand, within ECD_02737 at 2881.373 kb on + strand, within ECD_02737 at 2881.373 kb on + strand, within ECD_02737 at 2881.373 kb on + strand, within ECD_02737 at 2881.373 kb on + strand, within ECD_02737 at 2881.374 kb on - strand, within ECD_02737 at 2881.374 kb on - strand, within ECD_02737 at 2881.374 kb on - strand, within ECD_02737 at 2881.403 kb on + strand, within ECD_02737 at 2881.403 kb on + strand, within ECD_02737 at 2881.404 kb on - strand, within ECD_02737 at 2881.404 kb on - strand, within ECD_02737 at 2881.408 kb on - strand, within ECD_02737 at 2881.438 kb on + strand at 2881.504 kb on + strand at 2881.504 kb on + strand at 2881.505 kb on - strand at 2881.505 kb on - strand at 2881.543 kb on - strand at 2881.543 kb on - strand at 2881.669 kb on - strand at 2881.674 kb on - strand at 2882.128 kb on + strand, within ECD_02738 at 2882.184 kb on + strand, within ECD_02738 at 2882.184 kb on + strand, within ECD_02738 at 2882.185 kb on - strand, within ECD_02738 at 2882.257 kb on + strand, within ECD_02738
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 2,879,503 - ECD_02735 0.86 -0.1 2,879,576 - ECD_02735 0.89 -1.2 2,879,601 - ECD_02735 0.90 +0.2 2,879,601 - ECD_02735 0.90 +0.2 2,879,650 + +0.5 2,879,650 + -0.2 2,879,651 - -1.2 2,879,651 - +1.0 2,879,651 - +0.2 2,879,651 - -0.1 2,879,666 + -0.2 2,879,682 - -0.5 2,879,707 + +2.3 2,879,754 - -0.2 2,879,847 - +1.2 2,879,859 - +0.0 2,879,887 - +0.4 2,879,947 + -0.9 2,880,011 + -0.8 2,880,011 + +0.1 2,880,012 - -0.6 2,880,012 - +0.4 2,880,032 - -0.3 2,880,032 - +0.1 2,880,032 - +0.5 2,880,045 - -0.1 2,880,045 - +0.4 2,880,119 + ECD_02736 0.26 +0.4 2,880,198 - ECD_02736 0.46 -0.6 2,880,335 + ECD_02736 0.81 -1.4 2,880,335 + ECD_02736 0.81 -0.9 2,880,335 + ECD_02736 0.81 -1.3 2,880,381 - -0.1 2,880,381 - -0.2 2,880,381 - +0.5 2,880,381 - -0.3 2,880,398 - -0.1 2,880,428 + -0.1 2,880,528 - -2.3 2,880,560 - ECD_02737 0.12 -1.5 2,880,581 + ECD_02737 0.14 -1.4 2,880,627 - ECD_02737 0.18 -0.6 2,880,627 - ECD_02737 0.18 -0.1 2,880,695 + ECD_02737 0.24 +1.6 2,880,821 - ECD_02737 0.36 -0.6 2,880,821 - ECD_02737 0.36 -2.2 2,880,879 - ECD_02737 0.41 -0.4 2,880,961 + ECD_02737 0.48 -1.4 2,881,046 + ECD_02737 0.56 +0.2 2,881,047 - ECD_02737 0.56 -0.5 2,881,047 - ECD_02737 0.56 +1.4 2,881,047 - ECD_02737 0.56 -0.4 2,881,188 - ECD_02737 0.69 -0.3 2,881,223 - ECD_02737 0.72 -0.6 2,881,239 + ECD_02737 0.74 +0.6 2,881,373 + ECD_02737 0.86 +0.9 2,881,373 + ECD_02737 0.86 -0.8 2,881,373 + ECD_02737 0.86 -0.8 2,881,373 + ECD_02737 0.86 -0.9 2,881,374 - ECD_02737 0.86 +0.2 2,881,374 - ECD_02737 0.86 -0.7 2,881,374 - ECD_02737 0.86 -0.2 2,881,403 + ECD_02737 0.89 -0.2 2,881,403 + ECD_02737 0.89 -0.4 2,881,404 - ECD_02737 0.89 -0.0 2,881,404 - ECD_02737 0.89 +0.8 2,881,408 - ECD_02737 0.89 -0.4 2,881,438 + +0.1 2,881,504 + +0.3 2,881,504 + -1.6 2,881,505 - +0.1 2,881,505 - -0.1 2,881,543 - +1.8 2,881,543 - -0.2 2,881,669 - +0.2 2,881,674 - -0.2 2,882,128 + ECD_02738 0.13 -1.2 2,882,184 + ECD_02738 0.18 +1.6 2,882,184 + ECD_02738 0.18 -1.2 2,882,185 - ECD_02738 0.18 -1.0 2,882,257 + ECD_02738 0.24 -0.0
Or see this region's nucleotide sequence