Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02467 and ECD_02468 are separated by 407 nucleotides ECD_02468 and ECD_02469 overlap by 16 nucleotides ECD_02469 and ECD_02470 are separated by 131 nucleotides
ECD_02467: ECD_02467 - RNA polymerase sigma E factor, at 2,576,037 to 2,576,612
_02467
ECD_02468: ECD_02468 - quinolinate synthase, L-aspartate oxidase (B protein) subunit, at 2,577,020 to 2,578,642
_02468
ECD_02469: ECD_02469 - tRNA1(Val) (adenine(37)-N6)-methyltransferase, at 2,578,627 to 2,579,364
_02469
ECD_02470: ECD_02470 - ATP-dependent RNA helicase, at 2,579,496 to 2,580,830
_02470
Position (kb)
2577
2578
2579 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2576.754 kb on - strand at 2576.754 kb on - strand at 2576.766 kb on - strand at 2576.770 kb on - strand at 2576.778 kb on - strand at 2576.778 kb on - strand at 2576.805 kb on - strand at 2576.805 kb on - strand at 2576.827 kb on - strand at 2576.871 kb on - strand at 2576.961 kb on + strand at 2577.093 kb on + strand at 2577.126 kb on + strand at 2577.126 kb on + strand at 2577.127 kb on - strand at 2577.130 kb on + strand at 2577.130 kb on + strand at 2577.131 kb on - strand at 2577.391 kb on + strand, within ECD_02468 at 2577.391 kb on + strand, within ECD_02468 at 2577.392 kb on - strand, within ECD_02468 at 2577.403 kb on + strand, within ECD_02468 at 2577.404 kb on - strand, within ECD_02468 at 2577.517 kb on + strand, within ECD_02468 at 2577.651 kb on - strand, within ECD_02468 at 2577.739 kb on + strand, within ECD_02468 at 2577.764 kb on + strand, within ECD_02468 at 2577.943 kb on + strand, within ECD_02468 at 2577.943 kb on + strand, within ECD_02468 at 2577.944 kb on - strand, within ECD_02468 at 2577.965 kb on - strand, within ECD_02468 at 2578.004 kb on + strand, within ECD_02468 at 2578.073 kb on + strand, within ECD_02468 at 2578.073 kb on + strand, within ECD_02468 at 2578.073 kb on + strand, within ECD_02468 at 2578.074 kb on - strand, within ECD_02468 at 2578.074 kb on - strand, within ECD_02468 at 2578.075 kb on + strand, within ECD_02468 at 2578.075 kb on + strand, within ECD_02468 at 2578.089 kb on + strand, within ECD_02468 at 2578.089 kb on + strand, within ECD_02468 at 2578.130 kb on + strand, within ECD_02468 at 2578.130 kb on + strand, within ECD_02468 at 2578.131 kb on - strand, within ECD_02468 at 2578.161 kb on + strand, within ECD_02468 at 2578.211 kb on + strand, within ECD_02468 at 2578.246 kb on + strand, within ECD_02468 at 2578.270 kb on + strand, within ECD_02468 at 2578.271 kb on - strand, within ECD_02468 at 2578.323 kb on + strand, within ECD_02468 at 2578.323 kb on + strand, within ECD_02468 at 2578.323 kb on + strand, within ECD_02468 at 2578.333 kb on + strand, within ECD_02468 at 2578.333 kb on + strand, within ECD_02468 at 2578.333 kb on + strand, within ECD_02468 at 2578.333 kb on + strand, within ECD_02468 at 2578.347 kb on + strand, within ECD_02468 at 2578.347 kb on + strand, within ECD_02468 at 2578.347 kb on + strand, within ECD_02468 at 2578.348 kb on - strand, within ECD_02468 at 2578.357 kb on + strand, within ECD_02468 at 2578.367 kb on + strand, within ECD_02468 at 2578.367 kb on + strand, within ECD_02468 at 2578.368 kb on - strand, within ECD_02468 at 2578.448 kb on + strand, within ECD_02468 at 2578.628 kb on + strand at 2578.629 kb on - strand at 2578.629 kb on - strand at 2578.629 kb on - strand at 2578.629 kb on - strand at 2578.629 kb on - strand at 2578.632 kb on + strand at 2578.632 kb on + strand at 2578.633 kb on - strand at 2578.641 kb on - strand at 2578.641 kb on - strand at 2578.801 kb on + strand, within ECD_02469 at 2578.820 kb on - strand, within ECD_02469 at 2578.843 kb on - strand, within ECD_02469 at 2578.933 kb on - strand, within ECD_02469 at 2578.938 kb on + strand, within ECD_02469 at 2578.939 kb on - strand, within ECD_02469 at 2578.939 kb on - strand, within ECD_02469 at 2578.991 kb on + strand, within ECD_02469 at 2578.991 kb on + strand, within ECD_02469 at 2578.992 kb on - strand, within ECD_02469 at 2578.992 kb on - strand, within ECD_02469 at 2578.992 kb on - strand, within ECD_02469 at 2578.992 kb on - strand, within ECD_02469 at 2579.012 kb on - strand, within ECD_02469 at 2579.024 kb on - strand, within ECD_02469 at 2579.230 kb on + strand, within ECD_02469 at 2579.265 kb on + strand, within ECD_02469 at 2579.352 kb on + strand at 2579.353 kb on - strand at 2579.353 kb on - strand at 2579.490 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 2,576,754 - -0.4 2,576,754 - +0.8 2,576,766 - +0.5 2,576,770 - +0.8 2,576,778 - +0.2 2,576,778 - -0.0 2,576,805 - -1.0 2,576,805 - -0.5 2,576,827 - -0.4 2,576,871 - -1.0 2,576,961 + -0.2 2,577,093 + -0.1 2,577,126 + +0.8 2,577,126 + -0.7 2,577,127 - -0.2 2,577,130 + +0.5 2,577,130 + -0.6 2,577,131 - +2.1 2,577,391 + ECD_02468 0.23 -0.1 2,577,391 + ECD_02468 0.23 -0.4 2,577,392 - ECD_02468 0.23 -0.2 2,577,403 + ECD_02468 0.24 +0.1 2,577,404 - ECD_02468 0.24 -0.8 2,577,517 + ECD_02468 0.31 +0.2 2,577,651 - ECD_02468 0.39 +0.4 2,577,739 + ECD_02468 0.44 +0.3 2,577,764 + ECD_02468 0.46 -0.1 2,577,943 + ECD_02468 0.57 -0.7 2,577,943 + ECD_02468 0.57 -1.1 2,577,944 - ECD_02468 0.57 -0.4 2,577,965 - ECD_02468 0.58 +0.1 2,578,004 + ECD_02468 0.61 -0.3 2,578,073 + ECD_02468 0.65 +0.7 2,578,073 + ECD_02468 0.65 +1.1 2,578,073 + ECD_02468 0.65 -0.8 2,578,074 - ECD_02468 0.65 -0.1 2,578,074 - ECD_02468 0.65 -1.1 2,578,075 + ECD_02468 0.65 -0.3 2,578,075 + ECD_02468 0.65 +0.8 2,578,089 + ECD_02468 0.66 -1.1 2,578,089 + ECD_02468 0.66 +1.0 2,578,130 + ECD_02468 0.68 +1.2 2,578,130 + ECD_02468 0.68 -0.1 2,578,131 - ECD_02468 0.68 -0.1 2,578,161 + ECD_02468 0.70 -0.1 2,578,211 + ECD_02468 0.73 -0.2 2,578,246 + ECD_02468 0.76 -0.3 2,578,270 + ECD_02468 0.77 -1.4 2,578,271 - ECD_02468 0.77 -0.4 2,578,323 + ECD_02468 0.80 -0.2 2,578,323 + ECD_02468 0.80 -2.4 2,578,323 + ECD_02468 0.80 +0.0 2,578,333 + ECD_02468 0.81 +0.3 2,578,333 + ECD_02468 0.81 +0.4 2,578,333 + ECD_02468 0.81 -0.6 2,578,333 + ECD_02468 0.81 -0.0 2,578,347 + ECD_02468 0.82 -0.4 2,578,347 + ECD_02468 0.82 +0.5 2,578,347 + ECD_02468 0.82 +0.0 2,578,348 - ECD_02468 0.82 -0.3 2,578,357 + ECD_02468 0.82 -1.4 2,578,367 + ECD_02468 0.83 -2.4 2,578,367 + ECD_02468 0.83 -1.5 2,578,368 - ECD_02468 0.83 -0.5 2,578,448 + ECD_02468 0.88 -0.6 2,578,628 + +0.4 2,578,629 - +0.7 2,578,629 - -0.1 2,578,629 - -0.3 2,578,629 - -0.5 2,578,629 - +0.2 2,578,632 + -0.2 2,578,632 + +0.1 2,578,633 - +0.1 2,578,641 - +0.6 2,578,641 - +0.1 2,578,801 + ECD_02469 0.24 +0.2 2,578,820 - ECD_02469 0.26 +0.4 2,578,843 - ECD_02469 0.29 -1.3 2,578,933 - ECD_02469 0.41 +0.3 2,578,938 + ECD_02469 0.42 -0.2 2,578,939 - ECD_02469 0.42 -1.1 2,578,939 - ECD_02469 0.42 +0.5 2,578,991 + ECD_02469 0.49 +0.6 2,578,991 + ECD_02469 0.49 +0.1 2,578,992 - ECD_02469 0.49 +0.3 2,578,992 - ECD_02469 0.49 +0.6 2,578,992 - ECD_02469 0.49 +0.3 2,578,992 - ECD_02469 0.49 +0.4 2,579,012 - ECD_02469 0.52 +0.3 2,579,024 - ECD_02469 0.54 -0.6 2,579,230 + ECD_02469 0.82 -0.2 2,579,265 + ECD_02469 0.86 +0.3 2,579,352 + +0.1 2,579,353 - +1.2 2,579,353 - +0.0 2,579,490 + +0.2
Or see this region's nucleotide sequence