Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02448 and ECD_02449 are separated by 575 nucleotides
ECD_02448: ECD_02448 - sensor protein kinase regulating glmY sRNA in two-component system with response regulator GlrR, at 2,555,476 to 2,556,903
_02448
ECD_02449: ECD_02449 - phosphoribosylformyl-glycineamide synthetase, at 2,557,479 to 2,561,366
_02449
Position (kb)
2557
2558
2559
2560
2561
2562 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2556.623 kb on + strand, within ECD_02448 at 2556.644 kb on + strand, within ECD_02448 at 2556.680 kb on + strand, within ECD_02448 at 2556.693 kb on + strand, within ECD_02448 at 2556.694 kb on - strand, within ECD_02448 at 2556.694 kb on - strand, within ECD_02448 at 2556.694 kb on - strand, within ECD_02448 at 2556.748 kb on - strand, within ECD_02448 at 2556.748 kb on - strand, within ECD_02448 at 2556.784 kb on - strand at 2556.832 kb on + strand at 2556.835 kb on + strand at 2556.836 kb on - strand at 2556.836 kb on - strand at 2556.860 kb on - strand at 2556.910 kb on - strand at 2556.960 kb on - strand at 2557.010 kb on - strand at 2557.010 kb on - strand at 2557.037 kb on - strand at 2557.037 kb on - strand at 2557.038 kb on + strand at 2557.039 kb on - strand at 2557.039 kb on - strand at 2557.039 kb on - strand at 2557.043 kb on - strand at 2557.043 kb on - strand at 2557.043 kb on - strand at 2557.043 kb on - strand at 2557.102 kb on - strand at 2557.102 kb on - strand at 2557.102 kb on - strand at 2557.150 kb on - strand at 2557.150 kb on - strand at 2557.163 kb on - strand at 2557.205 kb on + strand at 2557.402 kb on + strand at 2557.402 kb on + strand at 2557.403 kb on - strand at 2557.407 kb on + strand at 2557.421 kb on + strand at 2557.438 kb on + strand at 2557.635 kb on - strand at 2557.669 kb on + strand at 2557.702 kb on + strand at 2557.916 kb on + strand, within ECD_02449 at 2557.917 kb on - strand, within ECD_02449 at 2557.941 kb on - strand, within ECD_02449 at 2557.941 kb on - strand, within ECD_02449 at 2557.962 kb on - strand, within ECD_02449 at 2558.080 kb on + strand, within ECD_02449 at 2558.081 kb on - strand, within ECD_02449 at 2558.081 kb on - strand, within ECD_02449 at 2558.153 kb on + strand, within ECD_02449 at 2558.153 kb on + strand, within ECD_02449 at 2558.153 kb on + strand, within ECD_02449 at 2558.268 kb on - strand, within ECD_02449 at 2558.269 kb on + strand, within ECD_02449 at 2558.270 kb on - strand, within ECD_02449 at 2558.403 kb on - strand, within ECD_02449 at 2558.448 kb on + strand, within ECD_02449 at 2558.449 kb on - strand, within ECD_02449 at 2558.449 kb on - strand, within ECD_02449 at 2558.503 kb on - strand, within ECD_02449 at 2558.506 kb on + strand, within ECD_02449 at 2558.507 kb on - strand, within ECD_02449 at 2558.722 kb on + strand, within ECD_02449 at 2558.735 kb on + strand, within ECD_02449 at 2558.736 kb on - strand, within ECD_02449 at 2558.736 kb on - strand, within ECD_02449 at 2558.767 kb on + strand, within ECD_02449 at 2558.768 kb on - strand, within ECD_02449 at 2558.796 kb on + strand, within ECD_02449 at 2558.797 kb on - strand, within ECD_02449 at 2559.032 kb on + strand, within ECD_02449 at 2559.032 kb on + strand, within ECD_02449 at 2559.033 kb on - strand, within ECD_02449 at 2559.041 kb on + strand, within ECD_02449 at 2559.106 kb on + strand, within ECD_02449 at 2559.165 kb on - strand, within ECD_02449 at 2559.296 kb on - strand, within ECD_02449 at 2559.298 kb on + strand, within ECD_02449 at 2559.299 kb on - strand, within ECD_02449 at 2559.299 kb on - strand, within ECD_02449 at 2559.299 kb on - strand, within ECD_02449 at 2559.646 kb on + strand, within ECD_02449 at 2559.647 kb on - strand, within ECD_02449 at 2559.666 kb on - strand, within ECD_02449 at 2559.666 kb on - strand, within ECD_02449 at 2559.735 kb on - strand, within ECD_02449 at 2559.775 kb on - strand, within ECD_02449 at 2560.192 kb on + strand, within ECD_02449 at 2560.192 kb on + strand, within ECD_02449 at 2560.503 kb on - strand, within ECD_02449 at 2560.598 kb on + strand, within ECD_02449 at 2560.599 kb on - strand, within ECD_02449 at 2560.599 kb on - strand, within ECD_02449 at 2560.600 kb on + strand, within ECD_02449 at 2560.745 kb on + strand, within ECD_02449 at 2560.745 kb on + strand, within ECD_02449 at 2560.746 kb on - strand, within ECD_02449 at 2560.747 kb on + strand, within ECD_02449 at 2560.748 kb on - strand, within ECD_02449 at 2560.938 kb on + strand, within ECD_02449 at 2560.939 kb on - strand, within ECD_02449 at 2561.025 kb on + strand at 2561.026 kb on - strand at 2561.026 kb on - strand at 2561.026 kb on - strand at 2561.030 kb on - strand at 2561.030 kb on - strand at 2561.030 kb on - strand at 2561.032 kb on + strand at 2561.032 kb on + strand at 2561.032 kb on + strand at 2561.032 kb on + strand at 2561.079 kb on - strand at 2561.186 kb on - strand at 2561.257 kb on + strand at 2561.257 kb on + strand at 2561.258 kb on - strand at 2561.258 kb on - strand at 2561.271 kb on - strand at 2561.366 kb on + strand at 2561.366 kb on + strand at 2561.422 kb on + strand at 2561.425 kb on - strand at 2561.508 kb on + strand at 2561.511 kb on + strand at 2561.511 kb on + strand at 2561.512 kb on - strand at 2561.555 kb on - strand at 2561.576 kb on - strand at 2561.776 kb on + strand at 2561.777 kb on - strand at 2561.777 kb on - strand at 2561.789 kb on + strand at 2561.790 kb on - strand at 2561.792 kb on - strand at 2561.890 kb on + strand at 2561.955 kb on - strand at 2561.955 kb on - strand at 2562.025 kb on + strand at 2562.147 kb on + strand at 2562.147 kb on + strand at 2562.327 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 2,556,623 + ECD_02448 0.80 +0.6 2,556,644 + ECD_02448 0.82 -0.1 2,556,680 + ECD_02448 0.84 +1.3 2,556,693 + ECD_02448 0.85 -0.0 2,556,694 - ECD_02448 0.85 +0.7 2,556,694 - ECD_02448 0.85 -0.1 2,556,694 - ECD_02448 0.85 -0.3 2,556,748 - ECD_02448 0.89 -0.1 2,556,748 - ECD_02448 0.89 +0.9 2,556,784 - +0.7 2,556,832 + -1.7 2,556,835 + -0.6 2,556,836 - -0.8 2,556,836 - +0.4 2,556,860 - +0.5 2,556,910 - +0.5 2,556,960 - +0.7 2,557,010 - -0.2 2,557,010 - -0.0 2,557,037 - +0.2 2,557,037 - -0.1 2,557,038 + -0.6 2,557,039 - +0.8 2,557,039 - +1.7 2,557,039 - +0.2 2,557,043 - +0.1 2,557,043 - +0.3 2,557,043 - +0.6 2,557,043 - -0.1 2,557,102 - -0.5 2,557,102 - -0.3 2,557,102 - +0.2 2,557,150 - +0.3 2,557,150 - -0.4 2,557,163 - -0.3 2,557,205 + +0.5 2,557,402 + +0.8 2,557,402 + -0.7 2,557,403 - +1.2 2,557,407 + -0.8 2,557,421 + -1.0 2,557,438 + +0.5 2,557,635 - -0.0 2,557,669 + -0.4 2,557,702 + -0.5 2,557,916 + ECD_02449 0.11 +0.4 2,557,917 - ECD_02449 0.11 +0.6 2,557,941 - ECD_02449 0.12 +1.3 2,557,941 - ECD_02449 0.12 -0.2 2,557,962 - ECD_02449 0.12 +0.1 2,558,080 + ECD_02449 0.15 -0.0 2,558,081 - ECD_02449 0.15 +0.9 2,558,081 - ECD_02449 0.15 +0.3 2,558,153 + ECD_02449 0.17 -0.8 2,558,153 + ECD_02449 0.17 -0.7 2,558,153 + ECD_02449 0.17 +0.8 2,558,268 - ECD_02449 0.20 +0.1 2,558,269 + ECD_02449 0.20 +1.0 2,558,270 - ECD_02449 0.20 -0.1 2,558,403 - ECD_02449 0.24 -0.7 2,558,448 + ECD_02449 0.25 +1.2 2,558,449 - ECD_02449 0.25 +1.8 2,558,449 - ECD_02449 0.25 -0.1 2,558,503 - ECD_02449 0.26 +0.9 2,558,506 + ECD_02449 0.26 +0.3 2,558,507 - ECD_02449 0.26 -0.1 2,558,722 + ECD_02449 0.32 -2.0 2,558,735 + ECD_02449 0.32 +0.6 2,558,736 - ECD_02449 0.32 -0.8 2,558,736 - ECD_02449 0.32 +0.7 2,558,767 + ECD_02449 0.33 -0.4 2,558,768 - ECD_02449 0.33 -0.8 2,558,796 + ECD_02449 0.34 +0.2 2,558,797 - ECD_02449 0.34 -0.2 2,559,032 + ECD_02449 0.40 +0.1 2,559,032 + ECD_02449 0.40 +1.5 2,559,033 - ECD_02449 0.40 -0.3 2,559,041 + ECD_02449 0.40 +0.1 2,559,106 + ECD_02449 0.42 -0.0 2,559,165 - ECD_02449 0.43 +1.0 2,559,296 - ECD_02449 0.47 +0.3 2,559,298 + ECD_02449 0.47 -0.7 2,559,299 - ECD_02449 0.47 +0.8 2,559,299 - ECD_02449 0.47 -0.2 2,559,299 - ECD_02449 0.47 -0.2 2,559,646 + ECD_02449 0.56 -0.2 2,559,647 - ECD_02449 0.56 -1.4 2,559,666 - ECD_02449 0.56 -0.9 2,559,666 - ECD_02449 0.56 +0.2 2,559,735 - ECD_02449 0.58 +0.5 2,559,775 - ECD_02449 0.59 +0.1 2,560,192 + ECD_02449 0.70 -0.8 2,560,192 + ECD_02449 0.70 +0.8 2,560,503 - ECD_02449 0.78 -1.9 2,560,598 + ECD_02449 0.80 +0.3 2,560,599 - ECD_02449 0.80 -0.7 2,560,599 - ECD_02449 0.80 +0.5 2,560,600 + ECD_02449 0.80 +0.2 2,560,745 + ECD_02449 0.84 +1.0 2,560,745 + ECD_02449 0.84 +0.1 2,560,746 - ECD_02449 0.84 -0.1 2,560,747 + ECD_02449 0.84 +1.3 2,560,748 - ECD_02449 0.84 -0.8 2,560,938 + ECD_02449 0.89 +0.6 2,560,939 - ECD_02449 0.89 -0.3 2,561,025 + -0.2 2,561,026 - +0.3 2,561,026 - -0.3 2,561,026 - -1.1 2,561,030 - +1.0 2,561,030 - -0.6 2,561,030 - +0.2 2,561,032 + +0.2 2,561,032 + -0.8 2,561,032 + -0.7 2,561,032 + +1.1 2,561,079 - +0.3 2,561,186 - +0.9 2,561,257 + -0.9 2,561,257 + +0.4 2,561,258 - +1.9 2,561,258 - -0.5 2,561,271 - +0.5 2,561,366 + +0.4 2,561,366 + -1.1 2,561,422 + -0.4 2,561,425 - -0.1 2,561,508 + -1.4 2,561,511 + -0.2 2,561,511 + -1.0 2,561,512 - -0.5 2,561,555 - -0.5 2,561,576 - -0.2 2,561,776 + +0.0 2,561,777 - +2.5 2,561,777 - -0.5 2,561,789 + -0.2 2,561,790 - +0.7 2,561,792 - +1.3 2,561,890 + +0.1 2,561,955 - +0.1 2,561,955 - -1.6 2,562,025 + +0.3 2,562,147 + -0.7 2,562,147 + +0.3 2,562,327 + +0.4
Or see this region's nucleotide sequence