Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02434 and ECD_02435 are separated by 96 nucleotides ECD_02435 and ECD_02436 are separated by 47 nucleotides ECD_02436 and ECD_02437 are separated by 11 nucleotides
ECD_02434: ECD_02434 - phenylpropionate dioxygenase, ferredoxin reductase subunit, at 2,537,852 to 2,539,054
_02434
ECD_02435: ECD_02435 - DoxX family inner membrane protein, at 2,539,151 to 2,539,573
_02435
ECD_02436: ECD_02436 - mutarotase superfamily protein, YphB family, at 2,539,621 to 2,540,493
_02436
ECD_02437: ECD_02437 - putative Zn-dependent NAD(P)-binding oxidoreductase, at 2,540,505 to 2,541,566
_02437
Position (kb)
2539
2540
2541 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2538.708 kb on + strand, within ECD_02434 at 2538.709 kb on - strand, within ECD_02434 at 2538.739 kb on + strand, within ECD_02434 at 2538.771 kb on + strand, within ECD_02434 at 2538.822 kb on - strand, within ECD_02434 at 2538.829 kb on + strand, within ECD_02434 at 2538.829 kb on + strand, within ECD_02434 at 2538.834 kb on + strand, within ECD_02434 at 2538.834 kb on + strand, within ECD_02434 at 2538.841 kb on + strand, within ECD_02434 at 2538.842 kb on - strand, within ECD_02434 at 2538.931 kb on + strand, within ECD_02434 at 2539.073 kb on - strand at 2539.112 kb on - strand at 2539.115 kb on - strand at 2539.130 kb on + strand at 2539.162 kb on - strand at 2539.200 kb on + strand, within ECD_02435 at 2539.283 kb on + strand, within ECD_02435 at 2539.284 kb on - strand, within ECD_02435 at 2539.285 kb on + strand, within ECD_02435 at 2539.339 kb on + strand, within ECD_02435 at 2539.340 kb on - strand, within ECD_02435 at 2539.362 kb on + strand, within ECD_02435 at 2539.362 kb on + strand, within ECD_02435 at 2539.537 kb on + strand at 2540.180 kb on + strand, within ECD_02436 at 2540.181 kb on - strand, within ECD_02436 at 2540.197 kb on - strand, within ECD_02436 at 2540.197 kb on - strand, within ECD_02436 at 2540.197 kb on - strand, within ECD_02436 at 2540.248 kb on + strand, within ECD_02436 at 2540.248 kb on + strand, within ECD_02436 at 2540.252 kb on + strand, within ECD_02436 at 2540.253 kb on - strand, within ECD_02436 at 2540.482 kb on - strand at 2540.483 kb on + strand at 2540.484 kb on - strand at 2540.484 kb on - strand at 2540.484 kb on - strand at 2540.484 kb on - strand at 2540.484 kb on - strand at 2540.484 kb on - strand at 2540.484 kb on - strand at 2540.520 kb on - strand at 2540.520 kb on - strand at 2540.752 kb on + strand, within ECD_02437 at 2540.753 kb on - strand, within ECD_02437 at 2540.949 kb on - strand, within ECD_02437 at 2541.076 kb on + strand, within ECD_02437 at 2541.076 kb on + strand, within ECD_02437 at 2541.225 kb on - strand, within ECD_02437 at 2541.225 kb on - strand, within ECD_02437 at 2541.234 kb on - strand, within ECD_02437 at 2541.234 kb on - strand, within ECD_02437 at 2541.369 kb on - strand, within ECD_02437 at 2541.425 kb on - strand, within ECD_02437 at 2541.425 kb on - strand, within ECD_02437 at 2541.428 kb on + strand, within ECD_02437 at 2541.428 kb on + strand, within ECD_02437 at 2541.428 kb on + strand, within ECD_02437 at 2541.428 kb on + strand, within ECD_02437 at 2541.428 kb on + strand, within ECD_02437 at 2541.429 kb on - strand, within ECD_02437 at 2541.429 kb on - strand, within ECD_02437 at 2541.429 kb on - strand, within ECD_02437 at 2541.429 kb on - strand, within ECD_02437 at 2541.429 kb on - strand, within ECD_02437 at 2541.429 kb on - strand, within ECD_02437 at 2541.429 kb on - strand, within ECD_02437 at 2541.429 kb on - strand, within ECD_02437 at 2541.430 kb on + strand, within ECD_02437 at 2541.431 kb on - strand, within ECD_02437 at 2541.431 kb on - strand, within ECD_02437 at 2541.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 2,538,708 + ECD_02434 0.71 -0.5 2,538,709 - ECD_02434 0.71 +0.6 2,538,739 + ECD_02434 0.74 +1.1 2,538,771 + ECD_02434 0.76 +0.1 2,538,822 - ECD_02434 0.81 -0.7 2,538,829 + ECD_02434 0.81 +0.6 2,538,829 + ECD_02434 0.81 +0.6 2,538,834 + ECD_02434 0.82 +0.4 2,538,834 + ECD_02434 0.82 +0.4 2,538,841 + ECD_02434 0.82 +0.8 2,538,842 - ECD_02434 0.82 -0.4 2,538,931 + ECD_02434 0.90 -0.5 2,539,073 - -0.4 2,539,112 - +0.9 2,539,115 - -0.9 2,539,130 + -0.2 2,539,162 - -1.4 2,539,200 + ECD_02435 0.12 +0.2 2,539,283 + ECD_02435 0.31 -0.8 2,539,284 - ECD_02435 0.31 -0.6 2,539,285 + ECD_02435 0.32 -0.0 2,539,339 + ECD_02435 0.44 +0.5 2,539,340 - ECD_02435 0.45 +2.5 2,539,362 + ECD_02435 0.50 -0.0 2,539,362 + ECD_02435 0.50 -0.1 2,539,537 + +1.2 2,540,180 + ECD_02436 0.64 -1.2 2,540,181 - ECD_02436 0.64 -0.0 2,540,197 - ECD_02436 0.66 +0.4 2,540,197 - ECD_02436 0.66 +0.5 2,540,197 - ECD_02436 0.66 +0.6 2,540,248 + ECD_02436 0.72 +1.3 2,540,248 + ECD_02436 0.72 -1.0 2,540,252 + ECD_02436 0.72 -1.8 2,540,253 - ECD_02436 0.72 +1.3 2,540,482 - -0.9 2,540,483 + +0.3 2,540,484 - -0.1 2,540,484 - +0.9 2,540,484 - -0.2 2,540,484 - +0.2 2,540,484 - -0.4 2,540,484 - -0.8 2,540,484 - +0.0 2,540,520 - -0.2 2,540,520 - +0.8 2,540,752 + ECD_02437 0.23 -0.1 2,540,753 - ECD_02437 0.23 +0.1 2,540,949 - ECD_02437 0.42 +0.4 2,541,076 + ECD_02437 0.54 +0.2 2,541,076 + ECD_02437 0.54 +0.7 2,541,225 - ECD_02437 0.68 +0.9 2,541,225 - ECD_02437 0.68 +0.6 2,541,234 - ECD_02437 0.69 +0.3 2,541,234 - ECD_02437 0.69 +0.8 2,541,369 - ECD_02437 0.81 +0.4 2,541,425 - ECD_02437 0.87 +0.5 2,541,425 - ECD_02437 0.87 +0.1 2,541,428 + ECD_02437 0.87 +1.2 2,541,428 + ECD_02437 0.87 -0.5 2,541,428 + ECD_02437 0.87 -1.3 2,541,428 + ECD_02437 0.87 +1.0 2,541,428 + ECD_02437 0.87 +0.4 2,541,429 - ECD_02437 0.87 +0.6 2,541,429 - ECD_02437 0.87 +1.5 2,541,429 - ECD_02437 0.87 +1.0 2,541,429 - ECD_02437 0.87 -0.2 2,541,429 - ECD_02437 0.87 -0.2 2,541,429 - ECD_02437 0.87 -0.3 2,541,429 - ECD_02437 0.87 +0.2 2,541,429 - ECD_02437 0.87 -0.4 2,541,430 + ECD_02437 0.87 +0.2 2,541,431 - ECD_02437 0.87 -0.3 2,541,431 - ECD_02437 0.87 +0.3 2,541,478 - -2.0
Or see this region's nucleotide sequence