Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02430 and ECD_02431 overlap by 4 nucleotides ECD_02431 and ECD_02432 overlap by 1 nucleotides ECD_02432 and ECD_02433 overlap by 4 nucleotides ECD_02433 and ECD_02434 are separated by 9 nucleotides
ECD_02430: ECD_02430 - 3-phenylpropionate dioxygenase, large (alpha) subunit, at 2,534,837 to 2,536,198
_02430
ECD_02431: ECD_02431 - 3-phenylpropionate dioxygenase, small (beta) subunit, at 2,536,195 to 2,536,713
_02431
ECD_02432: ECD_02432 - 3-phenylpropionate dioxygenase, ferredoxin subunit, at 2,536,713 to 2,537,033
_02432
ECD_02433: ECD_02433 - 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase, at 2,537,030 to 2,537,842
_02433
ECD_02434: ECD_02434 - phenylpropionate dioxygenase, ferredoxin reductase subunit, at 2,537,852 to 2,539,054
_02434
Position (kb)
2537
2538 Strain fitness (log2 ratio)
-1
0
1 at 2536.072 kb on + strand at 2536.073 kb on - strand at 2536.073 kb on - strand at 2536.073 kb on - strand at 2536.073 kb on - strand at 2536.073 kb on - strand at 2536.220 kb on + strand at 2536.220 kb on + strand at 2536.221 kb on - strand at 2536.488 kb on - strand, within ECD_02431 at 2536.553 kb on + strand, within ECD_02431 at 2536.592 kb on - strand, within ECD_02431 at 2536.659 kb on + strand, within ECD_02431 at 2536.703 kb on + strand at 2536.704 kb on - strand at 2536.725 kb on + strand at 2536.775 kb on + strand, within ECD_02432 at 2536.847 kb on + strand, within ECD_02432 at 2537.189 kb on - strand, within ECD_02433 at 2537.324 kb on - strand, within ECD_02433 at 2537.327 kb on - strand, within ECD_02433 at 2537.327 kb on - strand, within ECD_02433 at 2537.379 kb on + strand, within ECD_02433 at 2537.380 kb on - strand, within ECD_02433 at 2537.380 kb on - strand, within ECD_02433 at 2537.495 kb on + strand, within ECD_02433 at 2537.544 kb on - strand, within ECD_02433 at 2537.590 kb on + strand, within ECD_02433 at 2537.727 kb on - strand, within ECD_02433 at 2537.872 kb on + strand at 2537.975 kb on + strand, within ECD_02434 at 2538.027 kb on + strand, within ECD_02434 at 2538.123 kb on + strand, within ECD_02434 at 2538.129 kb on + strand, within ECD_02434 at 2538.168 kb on + strand, within ECD_02434 at 2538.313 kb on + strand, within ECD_02434 at 2538.314 kb on - strand, within ECD_02434 at 2538.314 kb on - strand, within ECD_02434 at 2538.355 kb on + strand, within ECD_02434 at 2538.356 kb on - strand, within ECD_02434 at 2538.356 kb on - strand, within ECD_02434 at 2538.356 kb on - strand, within ECD_02434 at 2538.422 kb on + strand, within ECD_02434 at 2538.470 kb on - strand, within ECD_02434 at 2538.607 kb on + strand, within ECD_02434 at 2538.708 kb on + strand, within ECD_02434 at 2538.709 kb on - strand, within ECD_02434 at 2538.739 kb on + strand, within ECD_02434 at 2538.771 kb on + strand, within ECD_02434 at 2538.822 kb on - strand, within ECD_02434 at 2538.829 kb on + strand, within ECD_02434 at 2538.829 kb on + strand, within ECD_02434 at 2538.834 kb on + strand, within ECD_02434 at 2538.834 kb on + strand, within ECD_02434 at 2538.841 kb on + strand, within ECD_02434 at 2538.842 kb on - strand, within ECD_02434
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 2,536,072 + +0.8 2,536,073 - +0.2 2,536,073 - -1.0 2,536,073 - +1.2 2,536,073 - -0.1 2,536,073 - -1.2 2,536,220 + -0.8 2,536,220 + +0.5 2,536,221 - +1.3 2,536,488 - ECD_02431 0.56 -0.5 2,536,553 + ECD_02431 0.69 +0.6 2,536,592 - ECD_02431 0.76 +0.6 2,536,659 + ECD_02431 0.89 -0.1 2,536,703 + -0.6 2,536,704 - +0.9 2,536,725 + +0.6 2,536,775 + ECD_02432 0.19 +0.8 2,536,847 + ECD_02432 0.42 -1.3 2,537,189 - ECD_02433 0.20 -0.7 2,537,324 - ECD_02433 0.36 -0.2 2,537,327 - ECD_02433 0.37 -1.3 2,537,327 - ECD_02433 0.37 -0.4 2,537,379 + ECD_02433 0.43 +0.1 2,537,380 - ECD_02433 0.43 -0.7 2,537,380 - ECD_02433 0.43 +0.1 2,537,495 + ECD_02433 0.57 -0.3 2,537,544 - ECD_02433 0.63 -0.6 2,537,590 + ECD_02433 0.69 +0.4 2,537,727 - ECD_02433 0.86 -0.4 2,537,872 + +0.5 2,537,975 + ECD_02434 0.10 -1.1 2,538,027 + ECD_02434 0.15 -0.8 2,538,123 + ECD_02434 0.23 -0.1 2,538,129 + ECD_02434 0.23 +0.4 2,538,168 + ECD_02434 0.26 -0.1 2,538,313 + ECD_02434 0.38 -0.5 2,538,314 - ECD_02434 0.38 -0.5 2,538,314 - ECD_02434 0.38 +0.2 2,538,355 + ECD_02434 0.42 -0.4 2,538,356 - ECD_02434 0.42 -0.3 2,538,356 - ECD_02434 0.42 +0.9 2,538,356 - ECD_02434 0.42 +0.1 2,538,422 + ECD_02434 0.47 -0.0 2,538,470 - ECD_02434 0.51 +0.0 2,538,607 + ECD_02434 0.63 -0.6 2,538,708 + ECD_02434 0.71 -0.5 2,538,709 - ECD_02434 0.71 +0.6 2,538,739 + ECD_02434 0.74 +1.1 2,538,771 + ECD_02434 0.76 +0.1 2,538,822 - ECD_02434 0.81 -0.7 2,538,829 + ECD_02434 0.81 +0.6 2,538,829 + ECD_02434 0.81 +0.6 2,538,834 + ECD_02434 0.82 +0.4 2,538,834 + ECD_02434 0.82 +0.4 2,538,841 + ECD_02434 0.82 +0.8 2,538,842 - ECD_02434 0.82 -0.4
Or see this region's nucleotide sequence