Strain Fitness in Escherichia coli BL21 around ECD_02406

Experiment: N4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02404 and ECD_02405 are separated by 10 nucleotidesECD_02405 and ECD_02406 are separated by 17 nucleotidesECD_02406 and ECD_02407 are separated by 110 nucleotides ECD_02404: ECD_02404 - BamABCDE complex OM biogenesis lipoprotein, at 2,501,954 to 2,503,132 _02404 ECD_02405: ECD_02405 - ancillary SecYEG translocon subunit; putative anti-RcsB factor, at 2,503,143 to 2,503,763 _02405 ECD_02406: ECD_02406 - histidyl tRNA synthetase, at 2,503,781 to 2,505,055 _02406 ECD_02407: ECD_02407 - 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, at 2,505,166 to 2,506,284 _02407 Position (kb) 2503 2504 2505 2506Strain fitness (log2 ratio) -1 0 1at 2503.197 kb on - strandat 2503.230 kb on - strand, within ECD_02405at 2503.453 kb on - strand, within ECD_02405at 2503.508 kb on - strand, within ECD_02405at 2503.512 kb on - strand, within ECD_02405at 2505.077 kb on - strandat 2505.165 kb on - strandat 2505.168 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N4
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2,503,197 - +0.2
2,503,230 - ECD_02405 0.14 -1.6
2,503,453 - ECD_02405 0.50 +0.8
2,503,508 - ECD_02405 0.59 +0.2
2,503,512 - ECD_02405 0.59 -0.0
2,505,077 - +0.6
2,505,165 - +0.2
2,505,168 - +0.1

Or see this region's nucleotide sequence