Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02403 and ECD_02404 are separated by 117 nucleotides ECD_02404 and ECD_02405 are separated by 10 nucleotides ECD_02405 and ECD_02406 are separated by 17 nucleotides
ECD_02403: ECD_02403 - GTPase; multicopy suppressor of ftsJ, at 2,500,364 to 2,501,836
_02403
ECD_02404: ECD_02404 - BamABCDE complex OM biogenesis lipoprotein, at 2,501,954 to 2,503,132
_02404
ECD_02405: ECD_02405 - ancillary SecYEG translocon subunit; putative anti-RcsB factor, at 2,503,143 to 2,503,763
_02405
ECD_02406: ECD_02406 - histidyl tRNA synthetase, at 2,503,781 to 2,505,055
_02406
Position (kb)
2501
2502
2503
2504 Strain fitness (log2 ratio)
-2
-1
0
1 at 2501.857 kb on - strand at 2501.879 kb on - strand at 2501.896 kb on - strand at 2501.963 kb on - strand at 2501.963 kb on - strand at 2501.963 kb on - strand at 2501.963 kb on - strand at 2502.136 kb on - strand, within ECD_02404 at 2502.346 kb on - strand, within ECD_02404 at 2502.621 kb on - strand, within ECD_02404 at 2502.766 kb on - strand, within ECD_02404 at 2503.197 kb on - strand at 2503.230 kb on - strand, within ECD_02405 at 2503.453 kb on - strand, within ECD_02405 at 2503.508 kb on - strand, within ECD_02405 at 2503.512 kb on - strand, within ECD_02405
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 2,501,857 - +0.2 2,501,879 - +0.1 2,501,896 - +0.2 2,501,963 - -1.0 2,501,963 - -0.7 2,501,963 - -0.2 2,501,963 - -0.2 2,502,136 - ECD_02404 0.15 -0.7 2,502,346 - ECD_02404 0.33 -1.9 2,502,621 - ECD_02404 0.57 +1.5 2,502,766 - ECD_02404 0.69 -0.5 2,503,197 - +0.2 2,503,230 - ECD_02405 0.14 -1.6 2,503,453 - ECD_02405 0.50 +0.8 2,503,508 - ECD_02405 0.59 +0.2 2,503,512 - ECD_02405 0.59 -0.0
Or see this region's nucleotide sequence