Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02308 and ECD_02309 are separated by 89 nucleotides ECD_02309 and ECD_02310 overlap by 4 nucleotides ECD_02310 and ECD_02311 are separated by 1 nucleotides
ECD_02308: ECD_02308 - transcriptional regulator of yefH, at 2,398,317 to 2,399,243
_02308
ECD_02309: ECD_02309 - putative inorganic ion transporter, at 2,399,333 to 2,400,331
_02309
ECD_02310: ECD_02310 - DUF3820 family protein, at 2,400,328 to 2,400,546
_02310
ECD_02311: ECD_02311 - DNA ligase, NAD(+)-dependent, at 2,400,548 to 2,402,563
_02311
Position (kb)
2399
2400
2401 Strain fitness (log2 ratio)
-1
0
1 at 2398.473 kb on + strand, within ECD_02308 at 2398.523 kb on + strand, within ECD_02308 at 2398.699 kb on + strand, within ECD_02308 at 2398.700 kb on - strand, within ECD_02308 at 2398.700 kb on - strand, within ECD_02308 at 2398.700 kb on - strand, within ECD_02308 at 2398.880 kb on + strand, within ECD_02308 at 2398.881 kb on - strand, within ECD_02308 at 2399.306 kb on + strand at 2399.473 kb on + strand, within ECD_02309 at 2399.643 kb on - strand, within ECD_02309 at 2399.957 kb on + strand, within ECD_02309 at 2399.959 kb on + strand, within ECD_02309 at 2400.067 kb on - strand, within ECD_02309 at 2400.071 kb on - strand, within ECD_02309 at 2400.294 kb on + strand at 2400.401 kb on - strand, within ECD_02310 at 2400.456 kb on - strand, within ECD_02310
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 2,398,473 + ECD_02308 0.17 -0.1 2,398,523 + ECD_02308 0.22 +0.3 2,398,699 + ECD_02308 0.41 -0.9 2,398,700 - ECD_02308 0.41 +0.4 2,398,700 - ECD_02308 0.41 +1.6 2,398,700 - ECD_02308 0.41 -0.5 2,398,880 + ECD_02308 0.61 +1.4 2,398,881 - ECD_02308 0.61 -0.1 2,399,306 + -0.7 2,399,473 + ECD_02309 0.14 +1.0 2,399,643 - ECD_02309 0.31 +0.7 2,399,957 + ECD_02309 0.62 +0.6 2,399,959 + ECD_02309 0.63 -0.3 2,400,067 - ECD_02309 0.73 -0.3 2,400,071 - ECD_02309 0.74 -0.1 2,400,294 + +0.5 2,400,401 - ECD_02310 0.33 +1.3 2,400,456 - ECD_02310 0.58 +0.4
Or see this region's nucleotide sequence