Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02298 and ECD_02299 are separated by 203 nucleotides ECD_02299 and ECD_02300 are separated by 114 nucleotides ECD_02300 and ECD_02301 are separated by 140 nucleotides
ECD_02298: ECD_02298 - glucokinase, at 2,386,347 to 2,387,312
_02298
ECD_02299: ECD_02299 - putative ion channel protein, at 2,387,516 to 2,388,772
_02299
ECD_02300: ECD_02300 - DUF2502 family putative periplasmic protein, at 2,388,887 to 2,389,213
_02300
ECD_02301: ECD_02301 - manganese/divalent cation transporter, at 2,389,354 to 2,390,592
_02301
Position (kb)
2387
2388
2389 Strain fitness (log2 ratio)
-2
-1
0
1 at 2386.593 kb on - strand, within ECD_02298 at 2386.662 kb on - strand, within ECD_02298 at 2386.717 kb on + strand, within ECD_02298 at 2386.932 kb on - strand, within ECD_02298 at 2387.133 kb on - strand, within ECD_02298 at 2387.157 kb on - strand, within ECD_02298 at 2387.157 kb on - strand, within ECD_02298 at 2387.157 kb on - strand, within ECD_02298 at 2387.157 kb on - strand, within ECD_02298 at 2387.171 kb on - strand, within ECD_02298 at 2387.216 kb on - strand at 2387.296 kb on - strand at 2387.303 kb on - strand at 2387.303 kb on - strand at 2387.375 kb on - strand at 2387.485 kb on + strand at 2387.486 kb on - strand at 2387.486 kb on - strand at 2387.701 kb on - strand, within ECD_02299 at 2387.824 kb on + strand, within ECD_02299 at 2387.835 kb on + strand, within ECD_02299 at 2387.836 kb on - strand, within ECD_02299 at 2387.960 kb on - strand, within ECD_02299 at 2387.960 kb on - strand, within ECD_02299 at 2387.998 kb on + strand, within ECD_02299 at 2387.999 kb on - strand, within ECD_02299 at 2388.022 kb on - strand, within ECD_02299 at 2388.417 kb on - strand, within ECD_02299 at 2388.437 kb on - strand, within ECD_02299 at 2388.705 kb on + strand at 2388.706 kb on - strand at 2388.708 kb on + strand at 2388.709 kb on - strand at 2388.963 kb on + strand, within ECD_02300 at 2389.103 kb on + strand, within ECD_02300 at 2389.133 kb on + strand, within ECD_02300 at 2389.263 kb on - strand at 2389.355 kb on + strand at 2389.356 kb on - strand at 2389.390 kb on - strand at 2389.564 kb on + strand, within ECD_02301 at 2389.767 kb on - strand, within ECD_02301
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 2,386,593 - ECD_02298 0.25 -0.3 2,386,662 - ECD_02298 0.33 -1.1 2,386,717 + ECD_02298 0.38 -0.5 2,386,932 - ECD_02298 0.61 -1.4 2,387,133 - ECD_02298 0.81 +0.9 2,387,157 - ECD_02298 0.84 -0.1 2,387,157 - ECD_02298 0.84 -0.9 2,387,157 - ECD_02298 0.84 +0.1 2,387,157 - ECD_02298 0.84 -0.5 2,387,171 - ECD_02298 0.85 -0.5 2,387,216 - +0.6 2,387,296 - -0.5 2,387,303 - -0.5 2,387,303 - +0.1 2,387,375 - +0.1 2,387,485 + -0.1 2,387,486 - -1.2 2,387,486 - -0.4 2,387,701 - ECD_02299 0.15 +0.5 2,387,824 + ECD_02299 0.25 -1.1 2,387,835 + ECD_02299 0.25 -0.1 2,387,836 - ECD_02299 0.25 +1.4 2,387,960 - ECD_02299 0.35 +1.0 2,387,960 - ECD_02299 0.35 +0.2 2,387,998 + ECD_02299 0.38 +0.1 2,387,999 - ECD_02299 0.38 +0.0 2,388,022 - ECD_02299 0.40 -0.0 2,388,417 - ECD_02299 0.72 +0.7 2,388,437 - ECD_02299 0.73 -0.7 2,388,705 + +0.1 2,388,706 - +0.9 2,388,708 + -0.0 2,388,709 - +0.7 2,388,963 + ECD_02300 0.23 +0.8 2,389,103 + ECD_02300 0.66 +0.2 2,389,133 + ECD_02300 0.75 +0.8 2,389,263 - -0.2 2,389,355 + +0.4 2,389,356 - +0.1 2,389,390 - -0.0 2,389,564 + ECD_02301 0.17 -2.4 2,389,767 - ECD_02301 0.33 +0.6
Or see this region's nucleotide sequence