Strain Fitness in Escherichia coli BL21 around ECD_02225

Experiment: N4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02223 and ECD_02224 are separated by 32 nucleotidesECD_02224 and ECD_02225 are separated by 57 nucleotidesECD_02225 and ECD_02226 are separated by 52 nucleotidesECD_02226 and ECD_02227 are separated by 135 nucleotides ECD_02223: ECD_02223 - putative inner membrane transporter; C4-dicarboxylate anaerobic carrier family protein, at 2,304,334 to 2,305,854 _02223 ECD_02224: ECD_02224 - putative NUDIX hydrolase, at 2,305,887 to 2,306,429 _02224 ECD_02225: ECD_02225 - phosphodiesterase activity on bis-pNPP, at 2,306,487 to 2,307,041 _02225 ECD_02226: ECD_02226 - glutathione S-transferase, at 2,307,094 to 2,307,738 _02226 ECD_02227: ECD_02227 - GSH-dependent disulfide bond oxidoreductase, at 2,307,874 to 2,308,521 _02227 Position (kb) 2306 2307 2308Strain fitness (log2 ratio) -1 0 1at 2305.543 kb on - strand, within ECD_02223at 2305.543 kb on - strand, within ECD_02223at 2305.804 kb on - strandat 2305.806 kb on + strandat 2306.100 kb on - strand, within ECD_02224at 2306.208 kb on + strand, within ECD_02224at 2306.309 kb on - strand, within ECD_02224at 2306.309 kb on - strand, within ECD_02224at 2306.406 kb on - strandat 2306.517 kb on - strandat 2306.517 kb on - strandat 2306.517 kb on - strandat 2306.539 kb on - strandat 2306.539 kb on - strandat 2306.547 kb on + strand, within ECD_02225at 2306.548 kb on - strand, within ECD_02225at 2306.548 kb on - strand, within ECD_02225at 2306.548 kb on - strand, within ECD_02225at 2306.548 kb on - strand, within ECD_02225at 2306.548 kb on - strand, within ECD_02225at 2306.846 kb on + strand, within ECD_02225at 2306.846 kb on + strand, within ECD_02225at 2306.846 kb on + strand, within ECD_02225at 2306.846 kb on + strand, within ECD_02225at 2306.847 kb on - strand, within ECD_02225at 2306.847 kb on - strand, within ECD_02225at 2306.847 kb on - strand, within ECD_02225at 2306.847 kb on - strand, within ECD_02225at 2306.847 kb on - strand, within ECD_02225at 2306.847 kb on - strand, within ECD_02225at 2306.847 kb on - strand, within ECD_02225at 2307.068 kb on + strandat 2307.069 kb on - strandat 2307.069 kb on - strandat 2307.069 kb on - strandat 2307.069 kb on - strandat 2307.069 kb on - strandat 2307.069 kb on - strandat 2307.164 kb on + strand, within ECD_02226at 2307.200 kb on - strand, within ECD_02226at 2307.468 kb on + strand, within ECD_02226at 2307.469 kb on - strand, within ECD_02226at 2307.687 kb on - strandat 2307.687 kb on - strandat 2307.739 kb on + strandat 2307.740 kb on - strandat 2307.740 kb on - strandat 2307.775 kb on + strandat 2307.816 kb on + strandat 2307.816 kb on + strandat 2307.817 kb on - strandat 2307.856 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N4
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2,305,543 - ECD_02223 0.79 +0.5
2,305,543 - ECD_02223 0.79 +1.2
2,305,804 - +0.3
2,305,806 + +0.3
2,306,100 - ECD_02224 0.39 -0.3
2,306,208 + ECD_02224 0.59 +0.3
2,306,309 - ECD_02224 0.78 +1.2
2,306,309 - ECD_02224 0.78 -0.4
2,306,406 - -0.1
2,306,517 - +0.3
2,306,517 - -0.8
2,306,517 - +0.8
2,306,539 - +0.4
2,306,539 - +0.8
2,306,547 + ECD_02225 0.11 -0.1
2,306,548 - ECD_02225 0.11 -0.0
2,306,548 - ECD_02225 0.11 -0.8
2,306,548 - ECD_02225 0.11 +1.0
2,306,548 - ECD_02225 0.11 +0.6
2,306,548 - ECD_02225 0.11 +1.0
2,306,846 + ECD_02225 0.65 +1.1
2,306,846 + ECD_02225 0.65 -0.2
2,306,846 + ECD_02225 0.65 +0.0
2,306,846 + ECD_02225 0.65 +1.2
2,306,847 - ECD_02225 0.65 +0.7
2,306,847 - ECD_02225 0.65 -0.4
2,306,847 - ECD_02225 0.65 +0.4
2,306,847 - ECD_02225 0.65 +0.4
2,306,847 - ECD_02225 0.65 -0.5
2,306,847 - ECD_02225 0.65 -0.8
2,306,847 - ECD_02225 0.65 +0.2
2,307,068 + -0.2
2,307,069 - -0.1
2,307,069 - +0.1
2,307,069 - +1.4
2,307,069 - +0.3
2,307,069 - -0.2
2,307,069 - -0.2
2,307,164 + ECD_02226 0.11 -0.1
2,307,200 - ECD_02226 0.16 -0.4
2,307,468 + ECD_02226 0.58 -0.9
2,307,469 - ECD_02226 0.58 -1.0
2,307,687 - -0.0
2,307,687 - +0.9
2,307,739 + -0.4
2,307,740 - +0.9
2,307,740 - +0.9
2,307,775 + +0.1
2,307,816 + +0.4
2,307,816 + +0.6
2,307,817 - -0.8
2,307,856 + -0.1

Or see this region's nucleotide sequence