Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02223 and ECD_02224 are separated by 32 nucleotides ECD_02224 and ECD_02225 are separated by 57 nucleotides ECD_02225 and ECD_02226 are separated by 52 nucleotides ECD_02226 and ECD_02227 are separated by 135 nucleotides
ECD_02223: ECD_02223 - putative inner membrane transporter; C4-dicarboxylate anaerobic carrier family protein, at 2,304,334 to 2,305,854
_02223
ECD_02224: ECD_02224 - putative NUDIX hydrolase, at 2,305,887 to 2,306,429
_02224
ECD_02225: ECD_02225 - phosphodiesterase activity on bis-pNPP, at 2,306,487 to 2,307,041
_02225
ECD_02226: ECD_02226 - glutathione S-transferase, at 2,307,094 to 2,307,738
_02226
ECD_02227: ECD_02227 - GSH-dependent disulfide bond oxidoreductase, at 2,307,874 to 2,308,521
_02227
Position (kb)
2306
2307
2308 Strain fitness (log2 ratio)
-1
0
1 at 2305.543 kb on - strand, within ECD_02223 at 2305.543 kb on - strand, within ECD_02223 at 2305.804 kb on - strand at 2305.806 kb on + strand at 2306.100 kb on - strand, within ECD_02224 at 2306.208 kb on + strand, within ECD_02224 at 2306.309 kb on - strand, within ECD_02224 at 2306.309 kb on - strand, within ECD_02224 at 2306.406 kb on - strand at 2306.517 kb on - strand at 2306.517 kb on - strand at 2306.517 kb on - strand at 2306.539 kb on - strand at 2306.539 kb on - strand at 2306.547 kb on + strand, within ECD_02225 at 2306.548 kb on - strand, within ECD_02225 at 2306.548 kb on - strand, within ECD_02225 at 2306.548 kb on - strand, within ECD_02225 at 2306.548 kb on - strand, within ECD_02225 at 2306.548 kb on - strand, within ECD_02225 at 2306.846 kb on + strand, within ECD_02225 at 2306.846 kb on + strand, within ECD_02225 at 2306.846 kb on + strand, within ECD_02225 at 2306.846 kb on + strand, within ECD_02225 at 2306.847 kb on - strand, within ECD_02225 at 2306.847 kb on - strand, within ECD_02225 at 2306.847 kb on - strand, within ECD_02225 at 2306.847 kb on - strand, within ECD_02225 at 2306.847 kb on - strand, within ECD_02225 at 2306.847 kb on - strand, within ECD_02225 at 2306.847 kb on - strand, within ECD_02225 at 2307.068 kb on + strand at 2307.069 kb on - strand at 2307.069 kb on - strand at 2307.069 kb on - strand at 2307.069 kb on - strand at 2307.069 kb on - strand at 2307.069 kb on - strand at 2307.164 kb on + strand, within ECD_02226 at 2307.200 kb on - strand, within ECD_02226 at 2307.468 kb on + strand, within ECD_02226 at 2307.469 kb on - strand, within ECD_02226 at 2307.687 kb on - strand at 2307.687 kb on - strand at 2307.739 kb on + strand at 2307.740 kb on - strand at 2307.740 kb on - strand at 2307.775 kb on + strand at 2307.816 kb on + strand at 2307.816 kb on + strand at 2307.817 kb on - strand at 2307.856 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 2,305,543 - ECD_02223 0.79 +0.5 2,305,543 - ECD_02223 0.79 +1.2 2,305,804 - +0.3 2,305,806 + +0.3 2,306,100 - ECD_02224 0.39 -0.3 2,306,208 + ECD_02224 0.59 +0.3 2,306,309 - ECD_02224 0.78 +1.2 2,306,309 - ECD_02224 0.78 -0.4 2,306,406 - -0.1 2,306,517 - +0.3 2,306,517 - -0.8 2,306,517 - +0.8 2,306,539 - +0.4 2,306,539 - +0.8 2,306,547 + ECD_02225 0.11 -0.1 2,306,548 - ECD_02225 0.11 -0.0 2,306,548 - ECD_02225 0.11 -0.8 2,306,548 - ECD_02225 0.11 +1.0 2,306,548 - ECD_02225 0.11 +0.6 2,306,548 - ECD_02225 0.11 +1.0 2,306,846 + ECD_02225 0.65 +1.1 2,306,846 + ECD_02225 0.65 -0.2 2,306,846 + ECD_02225 0.65 +0.0 2,306,846 + ECD_02225 0.65 +1.2 2,306,847 - ECD_02225 0.65 +0.7 2,306,847 - ECD_02225 0.65 -0.4 2,306,847 - ECD_02225 0.65 +0.4 2,306,847 - ECD_02225 0.65 +0.4 2,306,847 - ECD_02225 0.65 -0.5 2,306,847 - ECD_02225 0.65 -0.8 2,306,847 - ECD_02225 0.65 +0.2 2,307,068 + -0.2 2,307,069 - -0.1 2,307,069 - +0.1 2,307,069 - +1.4 2,307,069 - +0.3 2,307,069 - -0.2 2,307,069 - -0.2 2,307,164 + ECD_02226 0.11 -0.1 2,307,200 - ECD_02226 0.16 -0.4 2,307,468 + ECD_02226 0.58 -0.9 2,307,469 - ECD_02226 0.58 -1.0 2,307,687 - -0.0 2,307,687 - +0.9 2,307,739 + -0.4 2,307,740 - +0.9 2,307,740 - +0.9 2,307,775 + +0.1 2,307,816 + +0.4 2,307,816 + +0.6 2,307,817 - -0.8 2,307,856 + -0.1
Or see this region's nucleotide sequence