Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02150 and ECD_02151 are separated by 30 nucleotides ECD_02151 and ECD_02152 are separated by 73 nucleotides ECD_02152 and ECD_02153 are separated by 4 nucleotides
ECD_02150: ECD_02150 - short chain fatty acid transporter, at 2,215,117 to 2,216,439
_02150
ECD_02151: ECD_02151 - acetyl-CoA acetyltransferase, at 2,216,470 to 2,217,654
_02151
ECD_02152: ECD_02152 - DUF2135 family protein, putative host defense protein, at 2,217,728 to 2,218,504
_02152
ECD_02153: ECD_02153 - tandem DUF2300 domain protein, putative host defense protein, at 2,218,509 to 2,220,158
_02153
Position (kb)
2216
2217
2218 Strain fitness (log2 ratio)
-1
0
1 at 2215.971 kb on - strand, within ECD_02150 at 2215.975 kb on - strand, within ECD_02150 at 2215.975 kb on - strand, within ECD_02150 at 2215.991 kb on - strand, within ECD_02150 at 2215.992 kb on + strand, within ECD_02150 at 2216.053 kb on + strand, within ECD_02150 at 2216.054 kb on - strand, within ECD_02150 at 2216.175 kb on + strand, within ECD_02150 at 2216.378 kb on - strand at 2216.503 kb on - strand at 2216.571 kb on + strand at 2216.572 kb on - strand at 2216.640 kb on - strand, within ECD_02151 at 2216.729 kb on + strand, within ECD_02151 at 2216.836 kb on + strand, within ECD_02151 at 2217.011 kb on + strand, within ECD_02151 at 2217.011 kb on + strand, within ECD_02151 at 2217.012 kb on - strand, within ECD_02151 at 2217.058 kb on - strand, within ECD_02151 at 2217.557 kb on + strand at 2217.557 kb on + strand at 2217.653 kb on - strand at 2217.770 kb on - strand at 2217.784 kb on + strand at 2217.785 kb on - strand at 2217.785 kb on - strand at 2217.874 kb on - strand, within ECD_02152 at 2217.877 kb on - strand, within ECD_02152 at 2217.886 kb on - strand, within ECD_02152 at 2217.886 kb on - strand, within ECD_02152 at 2217.997 kb on - strand, within ECD_02152 at 2218.357 kb on - strand, within ECD_02152 at 2218.546 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 2,215,971 - ECD_02150 0.65 +0.2 2,215,975 - ECD_02150 0.65 -1.4 2,215,975 - ECD_02150 0.65 +0.6 2,215,991 - ECD_02150 0.66 +0.5 2,215,992 + ECD_02150 0.66 -0.3 2,216,053 + ECD_02150 0.71 -0.3 2,216,054 - ECD_02150 0.71 +0.1 2,216,175 + ECD_02150 0.80 -0.6 2,216,378 - +1.2 2,216,503 - -0.5 2,216,571 + -1.6 2,216,572 - +0.4 2,216,640 - ECD_02151 0.14 -0.4 2,216,729 + ECD_02151 0.22 -0.4 2,216,836 + ECD_02151 0.31 +0.5 2,217,011 + ECD_02151 0.46 -0.5 2,217,011 + ECD_02151 0.46 -0.9 2,217,012 - ECD_02151 0.46 +0.4 2,217,058 - ECD_02151 0.50 -0.4 2,217,557 + -0.0 2,217,557 + -0.3 2,217,653 - -1.5 2,217,770 - -0.5 2,217,784 + +0.4 2,217,785 - +0.5 2,217,785 - +0.4 2,217,874 - ECD_02152 0.19 -0.4 2,217,877 - ECD_02152 0.19 -0.4 2,217,886 - ECD_02152 0.20 +0.9 2,217,886 - ECD_02152 0.20 +0.3 2,217,997 - ECD_02152 0.35 +1.5 2,218,357 - ECD_02152 0.81 +0.1 2,218,546 + +0.4
Or see this region's nucleotide sequence