Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02075 and ECD_02076 overlap by 7 nucleotides ECD_02076 and ECD_02077 are separated by 242 nucleotides
ECD_02075: ECD_02075 - dihydropyrimidine dehydrogenase, NADH-dependent, subunit N, at 2,128,937 to 2,130,175
_02075
ECD_02076: ECD_02076 - dihydropyrimidine dehydrogenase, NADH-dependent, subunit C, at 2,130,169 to 2,131,404
_02076
ECD_02077: ECD_02077 - methyl-galactoside transporter subunit, at 2,131,647 to 2,132,657
_02077
Position (kb)
2130
2131
2132 Strain fitness (log2 ratio)
-1
0
1 at 2129.706 kb on + strand, within ECD_02075 at 2129.800 kb on - strand, within ECD_02075 at 2129.800 kb on - strand, within ECD_02075 at 2129.916 kb on + strand, within ECD_02075 at 2129.916 kb on + strand, within ECD_02075 at 2129.916 kb on + strand, within ECD_02075 at 2129.985 kb on + strand, within ECD_02075 at 2130.150 kb on - strand at 2130.643 kb on + strand, within ECD_02076 at 2130.801 kb on + strand, within ECD_02076 at 2131.695 kb on - strand at 2131.872 kb on - strand, within ECD_02077 at 2132.093 kb on - strand, within ECD_02077 at 2132.105 kb on - strand, within ECD_02077 at 2132.150 kb on + strand, within ECD_02077 at 2132.151 kb on - strand, within ECD_02077
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 2,129,706 + ECD_02075 0.62 +1.5 2,129,800 - ECD_02075 0.70 +0.7 2,129,800 - ECD_02075 0.70 -0.3 2,129,916 + ECD_02075 0.79 +0.4 2,129,916 + ECD_02075 0.79 -0.4 2,129,916 + ECD_02075 0.79 +0.8 2,129,985 + ECD_02075 0.85 +0.4 2,130,150 - -0.1 2,130,643 + ECD_02076 0.38 -1.1 2,130,801 + ECD_02076 0.51 -0.4 2,131,695 - +0.7 2,131,872 - ECD_02077 0.22 -0.4 2,132,093 - ECD_02077 0.44 -0.2 2,132,105 - ECD_02077 0.45 -1.4 2,132,150 + ECD_02077 0.50 -0.0 2,132,151 - ECD_02077 0.50 +0.7
Or see this region's nucleotide sequence