Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02073 and ECD_02074 are separated by 2 nucleotides ECD_02074 and ECD_02075 are separated by 193 nucleotides ECD_02075 and ECD_02076 overlap by 7 nucleotides
ECD_02073: ECD_02073 - DUF218 superfamily vancomycin high temperature exclusion protein, at 2,127,782 to 2,128,501
_02073
ECD_02074: ECD_02074 - DUF2542 family protein, at 2,128,504 to 2,128,743
_02074
ECD_02075: ECD_02075 - dihydropyrimidine dehydrogenase, NADH-dependent, subunit N, at 2,128,937 to 2,130,175
_02075
ECD_02076: ECD_02076 - dihydropyrimidine dehydrogenase, NADH-dependent, subunit C, at 2,130,169 to 2,131,404
_02076
Position (kb)
2128
2129
2130
2131 Strain fitness (log2 ratio)
-1
0
1 at 2127.975 kb on - strand, within ECD_02073 at 2128.010 kb on + strand, within ECD_02073 at 2128.035 kb on + strand, within ECD_02073 at 2128.315 kb on - strand, within ECD_02073 at 2129.706 kb on + strand, within ECD_02075 at 2129.800 kb on - strand, within ECD_02075 at 2129.800 kb on - strand, within ECD_02075 at 2129.916 kb on + strand, within ECD_02075 at 2129.916 kb on + strand, within ECD_02075 at 2129.916 kb on + strand, within ECD_02075 at 2129.985 kb on + strand, within ECD_02075 at 2130.150 kb on - strand at 2130.643 kb on + strand, within ECD_02076 at 2130.801 kb on + strand, within ECD_02076
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 2,127,975 - ECD_02073 0.27 -0.4 2,128,010 + ECD_02073 0.32 +0.4 2,128,035 + ECD_02073 0.35 -0.9 2,128,315 - ECD_02073 0.74 +1.4 2,129,706 + ECD_02075 0.62 +1.5 2,129,800 - ECD_02075 0.70 +0.7 2,129,800 - ECD_02075 0.70 -0.3 2,129,916 + ECD_02075 0.79 +0.4 2,129,916 + ECD_02075 0.79 -0.4 2,129,916 + ECD_02075 0.79 +0.8 2,129,985 + ECD_02075 0.85 +0.4 2,130,150 - -0.1 2,130,643 + ECD_02076 0.38 -1.1 2,130,801 + ECD_02076 0.51 -0.4
Or see this region's nucleotide sequence