Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01964 and ECD_01965 are separated by 2 nucleotides ECD_01965 and ECD_01966 are separated by 92 nucleotides ECD_01966 and ECD_01967 are separated by 2 nucleotides ECD_01967 and ECD_01968 are separated by 5 nucleotides
ECD_01964: ECD_01964 - putative acyl transferase, at 2,031,074 to 2,031,562
_01964
ECD_01965: ECD_01965 - putative glycosyl transferase, at 2,031,565 to 2,032,404
_01965
ECD_01966: ECD_01966 - colanic acid production tyrosine-protein kinase; autokinase; Ugd phosphorylase, at 2,032,497 to 2,034,659
_01966
ECD_01967: ECD_01967 - colanic acid production protein-tyrosine-phosphatase; Wzc-P dephosphorylase, at 2,034,662 to 2,035,105
_01967
ECD_01968: ECD_01968 - colanic acid export protein; outer membrane auxillary lipoprotein, at 2,035,111 to 2,036,250
_01968
Position (kb)
2032
2033
2034
2035 Strain fitness (log2 ratio)
-2
-1
0
1 at 2031.509 kb on + strand, within ECD_01964 at 2031.642 kb on + strand at 2031.643 kb on - strand at 2031.942 kb on + strand, within ECD_01965 at 2031.972 kb on - strand, within ECD_01965 at 2032.046 kb on + strand, within ECD_01965 at 2032.141 kb on - strand, within ECD_01965 at 2032.173 kb on + strand, within ECD_01965 at 2032.219 kb on - strand, within ECD_01965 at 2032.374 kb on + strand at 2032.376 kb on + strand at 2032.376 kb on + strand at 2032.377 kb on - strand at 2032.422 kb on + strand at 2032.753 kb on + strand, within ECD_01966 at 2032.872 kb on - strand, within ECD_01966 at 2033.260 kb on + strand, within ECD_01966 at 2033.261 kb on - strand, within ECD_01966 at 2033.501 kb on + strand, within ECD_01966 at 2033.824 kb on - strand, within ECD_01966 at 2033.902 kb on + strand, within ECD_01966 at 2034.060 kb on - strand, within ECD_01966 at 2034.663 kb on + strand at 2034.880 kb on - strand, within ECD_01967 at 2035.089 kb on - strand at 2035.099 kb on + strand at 2035.164 kb on + strand at 2035.224 kb on - strand at 2035.236 kb on - strand, within ECD_01968 at 2035.298 kb on + strand, within ECD_01968 at 2035.302 kb on + strand, within ECD_01968
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 2,031,509 + ECD_01964 0.89 -0.8 2,031,642 + -0.6 2,031,643 - -0.7 2,031,942 + ECD_01965 0.45 +0.0 2,031,972 - ECD_01965 0.48 +0.4 2,032,046 + ECD_01965 0.57 +0.5 2,032,141 - ECD_01965 0.69 -1.2 2,032,173 + ECD_01965 0.72 -0.4 2,032,219 - ECD_01965 0.78 +0.6 2,032,374 + -0.1 2,032,376 + -1.1 2,032,376 + +0.9 2,032,377 - -0.2 2,032,422 + -0.4 2,032,753 + ECD_01966 0.12 -2.1 2,032,872 - ECD_01966 0.17 -0.3 2,033,260 + ECD_01966 0.35 +0.1 2,033,261 - ECD_01966 0.35 +0.4 2,033,501 + ECD_01966 0.46 -1.0 2,033,824 - ECD_01966 0.61 +1.1 2,033,902 + ECD_01966 0.65 -0.8 2,034,060 - ECD_01966 0.72 +0.1 2,034,663 + +0.3 2,034,880 - ECD_01967 0.49 -0.5 2,035,089 - -1.3 2,035,099 + +0.5 2,035,164 + +0.7 2,035,224 - +0.6 2,035,236 - ECD_01968 0.11 +0.5 2,035,298 + ECD_01968 0.16 -0.7 2,035,302 + ECD_01968 0.17 +0.6
Or see this region's nucleotide sequence