Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01930 and ECD_01931 are separated by 247 nucleotides ECD_01931 and ECD_01932 are separated by 163 nucleotides
ECD_01930: ECD_01930 - UDP-glucose 6-dehydrogenase, at 1,994,250 to 1,995,416
_01930
ECD_01931: ECD_01931 - 6-phosphogluconate dehydrogenase, decarboxylating, at 1,995,664 to 1,997,070
_01931
ECD_01932: ECD_01932 - Phosphomannomutase, at 1,997,234 to 1,998,598
_01932
Position (kb)
1995
1996
1997
1998 Strain fitness (log2 ratio)
-1
0
1
2 at 1994.693 kb on - strand, within ECD_01930 at 1994.706 kb on - strand, within ECD_01930 at 1994.768 kb on - strand, within ECD_01930 at 1994.772 kb on - strand, within ECD_01930 at 1994.946 kb on - strand, within ECD_01930 at 1994.946 kb on - strand, within ECD_01930 at 1994.946 kb on - strand, within ECD_01930 at 1994.946 kb on - strand, within ECD_01930 at 1995.191 kb on - strand, within ECD_01930 at 1995.191 kb on - strand, within ECD_01930 at 1995.223 kb on - strand, within ECD_01930 at 1995.223 kb on - strand, within ECD_01930 at 1995.334 kb on - strand at 1995.334 kb on - strand at 1995.389 kb on - strand at 1995.501 kb on - strand at 1995.711 kb on + strand at 1995.712 kb on - strand at 1995.713 kb on + strand at 1995.717 kb on + strand at 1995.717 kb on + strand at 1995.717 kb on + strand at 1995.788 kb on + strand at 1995.788 kb on + strand at 1995.789 kb on - strand at 1995.791 kb on + strand at 1996.074 kb on - strand, within ECD_01931 at 1996.095 kb on - strand, within ECD_01931 at 1996.170 kb on + strand, within ECD_01931 at 1996.206 kb on + strand, within ECD_01931 at 1996.208 kb on + strand, within ECD_01931 at 1996.383 kb on - strand, within ECD_01931 at 1996.556 kb on + strand, within ECD_01931 at 1996.557 kb on - strand, within ECD_01931 at 1996.651 kb on - strand, within ECD_01931 at 1996.711 kb on - strand, within ECD_01931 at 1996.803 kb on - strand, within ECD_01931 at 1996.990 kb on - strand at 1997.076 kb on - strand at 1997.126 kb on - strand at 1997.126 kb on - strand at 1997.126 kb on - strand at 1997.150 kb on - strand at 1997.186 kb on - strand at 1997.235 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,994,693 - ECD_01930 0.38 -0.4 1,994,706 - ECD_01930 0.39 -0.3 1,994,768 - ECD_01930 0.44 +0.1 1,994,772 - ECD_01930 0.45 -0.2 1,994,946 - ECD_01930 0.60 -0.4 1,994,946 - ECD_01930 0.60 -0.1 1,994,946 - ECD_01930 0.60 -1.0 1,994,946 - ECD_01930 0.60 +0.0 1,995,191 - ECD_01930 0.81 +0.3 1,995,191 - ECD_01930 0.81 -0.3 1,995,223 - ECD_01930 0.83 +0.3 1,995,223 - ECD_01930 0.83 -0.0 1,995,334 - +0.1 1,995,334 - -0.2 1,995,389 - -0.6 1,995,501 - -0.0 1,995,711 + +0.3 1,995,712 - -1.4 1,995,713 + -0.3 1,995,717 + +0.4 1,995,717 + -0.9 1,995,717 + +0.0 1,995,788 + +1.9 1,995,788 + -0.7 1,995,789 - +1.0 1,995,791 + -1.4 1,996,074 - ECD_01931 0.29 +0.3 1,996,095 - ECD_01931 0.31 +0.4 1,996,170 + ECD_01931 0.36 -1.1 1,996,206 + ECD_01931 0.39 -0.5 1,996,208 + ECD_01931 0.39 -0.7 1,996,383 - ECD_01931 0.51 -1.0 1,996,556 + ECD_01931 0.63 +0.6 1,996,557 - ECD_01931 0.63 -0.9 1,996,651 - ECD_01931 0.70 -0.9 1,996,711 - ECD_01931 0.74 -0.6 1,996,803 - ECD_01931 0.81 -1.0 1,996,990 - -0.1 1,997,076 - +0.5 1,997,126 - +0.7 1,997,126 - +0.6 1,997,126 - -0.6 1,997,150 - -0.5 1,997,186 - -0.5 1,997,235 + -0.0
Or see this region's nucleotide sequence