Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01904 and ECD_01906 overlap by 118 nucleotides ECD_01906 and ECD_01907 overlap by 13 nucleotides ECD_01907 and ECD_01908 overlap by 68 nucleotides ECD_01908 and ECD_01909 are separated by 288 nucleotides
ECD_01904: ECD_01904 - IS2 transposase TnpB, at 1,972,901 to 1,973,557
_01904
ECD_01906: ECD_01906 - hypothetical protein, at 1,973,440 to 1,973,739
_01906
ECD_01907: ECD_01907 - hypothetical protein, at 1,973,727 to 1,974,161
_01907
ECD_01908: ECD_01908 - hypothetical protein, at 1,974,094 to 1,974,504
_01908
ECD_01909: ECD_01909 - hypothetical protein, at 1,974,793 to 1,974,951
_01909
Position (kb) 1973
1974
1975 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1972.956 kb on + strand at 1973.006 kb on - strand, within ECD_01904 at 1973.006 kb on - strand, within ECD_01904 at 1973.007 kb on + strand, within ECD_01904 at 1973.008 kb on - strand, within ECD_01904 at 1973.008 kb on - strand, within ECD_01904 at 1973.068 kb on + strand, within ECD_01904 at 1973.068 kb on + strand, within ECD_01904 at 1973.076 kb on + strand, within ECD_01904 at 1973.076 kb on + strand, within ECD_01904 at 1973.077 kb on - strand, within ECD_01904 at 1973.077 kb on - strand, within ECD_01904 at 1973.077 kb on - strand, within ECD_01904 at 1973.077 kb on - strand, within ECD_01904 at 1973.458 kb on + strand at 1973.458 kb on + strand at 1973.458 kb on + strand at 1973.458 kb on + strand at 1973.458 kb on + strand at 1973.459 kb on - strand at 1973.459 kb on - strand at 1973.459 kb on - strand at 1973.480 kb on + strand at 1973.558 kb on - strand, within ECD_01906 at 1973.813 kb on - strand, within ECD_01907 at 1973.850 kb on - strand, within ECD_01907 at 1973.999 kb on - strand, within ECD_01907 at 1974.010 kb on + strand, within ECD_01907 at 1974.043 kb on + strand, within ECD_01907 at 1974.052 kb on + strand, within ECD_01907 at 1974.053 kb on - strand, within ECD_01907 at 1974.128 kb on + strand at 1974.128 kb on + strand at 1974.129 kb on - strand at 1974.441 kb on + strand, within ECD_01908 at 1974.633 kb on + strand at 1974.759 kb on + strand at 1974.795 kb on - strand at 1975.099 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,972,956 + -0.4 1,973,006 - ECD_01904 0.16 +0.1 1,973,006 - ECD_01904 0.16 -0.1 1,973,007 + ECD_01904 0.16 +0.9 1,973,008 - ECD_01904 0.16 +0.0 1,973,008 - ECD_01904 0.16 +0.1 1,973,068 + ECD_01904 0.25 -0.3 1,973,068 + ECD_01904 0.25 +0.3 1,973,076 + ECD_01904 0.27 -0.3 1,973,076 + ECD_01904 0.27 -0.4 1,973,077 - ECD_01904 0.27 -1.0 1,973,077 - ECD_01904 0.27 -0.6 1,973,077 - ECD_01904 0.27 +0.3 1,973,077 - ECD_01904 0.27 -1.0 1,973,458 + +1.1 1,973,458 + -1.2 1,973,458 + -1.0 1,973,458 + +0.1 1,973,458 + -1.0 1,973,459 - +0.9 1,973,459 - +0.3 1,973,459 - -1.2 1,973,480 + -0.0 1,973,558 - ECD_01906 0.39 -0.5 1,973,813 - ECD_01907 0.20 -0.5 1,973,850 - ECD_01907 0.28 -0.9 1,973,999 - ECD_01907 0.63 -2.9 1,974,010 + ECD_01907 0.65 +0.0 1,974,043 + ECD_01907 0.73 -0.9 1,974,052 + ECD_01907 0.75 -0.5 1,974,053 - ECD_01907 0.75 +0.2 1,974,128 + -1.7 1,974,128 + -0.9 1,974,129 - +0.1 1,974,441 + ECD_01908 0.84 -0.7 1,974,633 + -0.7 1,974,759 + -1.0 1,974,795 - -0.4 1,975,099 + +0.3
Or see this region's nucleotide sequence