Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01890 and ECD_t00033 are separated by 100 nucleotides ECD_t00033 and ECD_01891 are separated by 238 nucleotides
ECD_01890: ECD_01890 - anti-repressor for DgsA(Mlc), at 1,948,798 to 1,949,595
_01890
ECD_t00033: ECD_t00033 - tRNA-Asn, at 1,949,696 to 1,949,771
_t00033
ECD_01891: ECD_01891 - putative adhesin, at 1,950,010 to 1,957,161
_01891
Position (kb)
1950
1951
1952
1953
1954
1955
1956
1957
1958 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1949.140 kb on - strand, within ECD_01890 at 1949.298 kb on + strand, within ECD_01890 at 1950.131 kb on + strand at 1950.514 kb on - strand at 1950.762 kb on + strand, within ECD_01891 at 1951.010 kb on + strand, within ECD_01891 at 1951.119 kb on + strand, within ECD_01891 at 1951.146 kb on + strand, within ECD_01891 at 1951.701 kb on - strand, within ECD_01891 at 1951.864 kb on + strand, within ECD_01891 at 1952.052 kb on - strand, within ECD_01891 at 1952.064 kb on + strand, within ECD_01891 at 1952.189 kb on - strand, within ECD_01891 at 1952.312 kb on + strand, within ECD_01891 at 1953.042 kb on + strand, within ECD_01891 at 1953.042 kb on + strand, within ECD_01891 at 1953.132 kb on + strand, within ECD_01891 at 1953.132 kb on + strand, within ECD_01891 at 1953.133 kb on - strand, within ECD_01891 at 1953.768 kb on + strand, within ECD_01891 at 1954.117 kb on - strand, within ECD_01891 at 1954.216 kb on + strand, within ECD_01891 at 1954.218 kb on + strand, within ECD_01891 at 1954.314 kb on + strand, within ECD_01891 at 1954.315 kb on - strand, within ECD_01891 at 1954.317 kb on - strand, within ECD_01891 at 1954.317 kb on - strand, within ECD_01891 at 1954.318 kb on + strand, within ECD_01891 at 1954.321 kb on - strand, within ECD_01891 at 1954.432 kb on + strand, within ECD_01891 at 1954.432 kb on + strand, within ECD_01891 at 1954.432 kb on + strand, within ECD_01891 at 1954.432 kb on + strand, within ECD_01891 at 1954.433 kb on - strand, within ECD_01891 at 1954.433 kb on - strand, within ECD_01891 at 1954.632 kb on + strand, within ECD_01891 at 1954.633 kb on - strand, within ECD_01891 at 1954.914 kb on + strand, within ECD_01891 at 1954.997 kb on - strand, within ECD_01891 at 1955.099 kb on + strand, within ECD_01891 at 1955.099 kb on + strand, within ECD_01891 at 1955.100 kb on - strand, within ECD_01891 at 1955.542 kb on - strand, within ECD_01891 at 1955.544 kb on + strand, within ECD_01891 at 1955.594 kb on - strand, within ECD_01891 at 1955.707 kb on - strand, within ECD_01891 at 1956.017 kb on + strand, within ECD_01891 at 1956.018 kb on - strand, within ECD_01891 at 1956.018 kb on - strand, within ECD_01891 at 1956.018 kb on - strand, within ECD_01891 at 1956.018 kb on - strand, within ECD_01891 at 1956.119 kb on + strand, within ECD_01891 at 1956.232 kb on - strand, within ECD_01891 at 1956.233 kb on + strand, within ECD_01891 at 1956.234 kb on - strand, within ECD_01891 at 1956.308 kb on - strand, within ECD_01891 at 1956.308 kb on - strand, within ECD_01891 at 1956.348 kb on - strand, within ECD_01891 at 1956.348 kb on - strand, within ECD_01891 at 1956.658 kb on + strand at 1956.827 kb on - strand at 1956.827 kb on - strand at 1956.943 kb on + strand at 1957.042 kb on + strand at 1957.297 kb on + strand at 1957.413 kb on - strand at 1957.475 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,949,140 - ECD_01890 0.43 -0.3 1,949,298 + ECD_01890 0.63 -0.3 1,950,131 + +0.0 1,950,514 - +0.0 1,950,762 + ECD_01891 0.11 -0.3 1,951,010 + ECD_01891 0.14 +0.9 1,951,119 + ECD_01891 0.16 +0.0 1,951,146 + ECD_01891 0.16 +1.3 1,951,701 - ECD_01891 0.24 +0.7 1,951,864 + ECD_01891 0.26 -1.0 1,952,052 - ECD_01891 0.29 -0.1 1,952,064 + ECD_01891 0.29 +0.1 1,952,189 - ECD_01891 0.30 -0.8 1,952,312 + ECD_01891 0.32 -1.8 1,953,042 + ECD_01891 0.42 +0.3 1,953,042 + ECD_01891 0.42 -0.2 1,953,132 + ECD_01891 0.44 +0.3 1,953,132 + ECD_01891 0.44 +1.1 1,953,133 - ECD_01891 0.44 +1.9 1,953,768 + ECD_01891 0.53 +0.5 1,954,117 - ECD_01891 0.57 +1.0 1,954,216 + ECD_01891 0.59 -0.4 1,954,218 + ECD_01891 0.59 -0.8 1,954,314 + ECD_01891 0.60 -0.3 1,954,315 - ECD_01891 0.60 +0.9 1,954,317 - ECD_01891 0.60 +1.3 1,954,317 - ECD_01891 0.60 +0.6 1,954,318 + ECD_01891 0.60 -0.0 1,954,321 - ECD_01891 0.60 +0.2 1,954,432 + ECD_01891 0.62 -0.1 1,954,432 + ECD_01891 0.62 -0.5 1,954,432 + ECD_01891 0.62 -0.1 1,954,432 + ECD_01891 0.62 -1.1 1,954,433 - ECD_01891 0.62 +1.0 1,954,433 - ECD_01891 0.62 +0.1 1,954,632 + ECD_01891 0.65 +0.3 1,954,633 - ECD_01891 0.65 +1.3 1,954,914 + ECD_01891 0.69 -1.1 1,954,997 - ECD_01891 0.70 -1.3 1,955,099 + ECD_01891 0.71 -0.1 1,955,099 + ECD_01891 0.71 +1.1 1,955,100 - ECD_01891 0.71 -0.2 1,955,542 - ECD_01891 0.77 -1.0 1,955,544 + ECD_01891 0.77 +1.3 1,955,594 - ECD_01891 0.78 +0.2 1,955,707 - ECD_01891 0.80 +0.6 1,956,017 + ECD_01891 0.84 -0.3 1,956,018 - ECD_01891 0.84 +1.3 1,956,018 - ECD_01891 0.84 -0.0 1,956,018 - ECD_01891 0.84 -0.7 1,956,018 - ECD_01891 0.84 -1.1 1,956,119 + ECD_01891 0.85 +1.3 1,956,232 - ECD_01891 0.87 +0.1 1,956,233 + ECD_01891 0.87 -0.7 1,956,234 - ECD_01891 0.87 -1.1 1,956,308 - ECD_01891 0.88 -0.2 1,956,308 - ECD_01891 0.88 -0.6 1,956,348 - ECD_01891 0.89 +0.9 1,956,348 - ECD_01891 0.89 +0.6 1,956,658 + -0.7 1,956,827 - +0.0 1,956,827 - +0.5 1,956,943 + +0.2 1,957,042 + +0.3 1,957,297 + -1.3 1,957,413 - -0.2 1,957,475 - -0.6
Or see this region's nucleotide sequence