Experiment: N4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01842 and ECD_01843 are separated by 164 nucleotides ECD_01843 and ECD_01844 are separated by 24 nucleotides
ECD_01842: ECD_01842 - tRNA (cmo5U34)-carboxymethyltransferase, carboxy-SAM-dependent, at 1,899,360 to 1,900,331
_01842
ECD_01843: ECD_01843 - trimethylamine N-oxide reductase system III, catalytic subunit, at 1,900,496 to 1,902,925
_01843
ECD_01844: ECD_01844 - TMAO reductase III (TorYZ), cytochrome c-type subunit, at 1,902,950 to 1,904,050
_01844
Position (kb)
1900
1901
1902
1903 Strain fitness (log2 ratio)
-2
-1
0
1 at 1899.522 kb on + strand, within ECD_01842 at 1899.587 kb on + strand, within ECD_01842 at 1899.648 kb on + strand, within ECD_01842 at 1900.450 kb on + strand at 1900.552 kb on - strand at 1900.880 kb on - strand, within ECD_01843 at 1900.988 kb on - strand, within ECD_01843 at 1902.345 kb on + strand, within ECD_01843 at 1902.403 kb on - strand, within ECD_01843 at 1902.443 kb on - strand, within ECD_01843 at 1902.444 kb on + strand, within ECD_01843 at 1902.445 kb on - strand, within ECD_01843 at 1902.541 kb on + strand, within ECD_01843 at 1902.569 kb on + strand, within ECD_01843 at 1902.570 kb on - strand, within ECD_01843 at 1902.597 kb on + strand, within ECD_01843 at 1902.597 kb on + strand, within ECD_01843 at 1902.598 kb on - strand, within ECD_01843 at 1902.598 kb on - strand, within ECD_01843 at 1902.714 kb on - strand at 1903.078 kb on - strand, within ECD_01844 at 1903.141 kb on - strand, within ECD_01844 at 1903.265 kb on - strand, within ECD_01844
Per-strain Table
Position Strand Gene LocusTag Fraction N4 remove 1,899,522 + ECD_01842 0.17 +0.9 1,899,587 + ECD_01842 0.23 +1.5 1,899,648 + ECD_01842 0.30 -0.5 1,900,450 + -0.2 1,900,552 - -0.7 1,900,880 - ECD_01843 0.16 +0.5 1,900,988 - ECD_01843 0.20 -0.6 1,902,345 + ECD_01843 0.76 -2.6 1,902,403 - ECD_01843 0.78 -0.3 1,902,443 - ECD_01843 0.80 +0.2 1,902,444 + ECD_01843 0.80 -1.3 1,902,445 - ECD_01843 0.80 +0.1 1,902,541 + ECD_01843 0.84 -0.8 1,902,569 + ECD_01843 0.85 -0.5 1,902,570 - ECD_01843 0.85 -1.6 1,902,597 + ECD_01843 0.86 +0.7 1,902,597 + ECD_01843 0.86 +0.4 1,902,598 - ECD_01843 0.87 +0.2 1,902,598 - ECD_01843 0.87 -0.4 1,902,714 - -0.2 1,903,078 - ECD_01844 0.12 +0.6 1,903,141 - ECD_01844 0.17 +0.2 1,903,265 - ECD_01844 0.29 -0.3
Or see this region's nucleotide sequence